Browse Element(s) Details


Os.52970.1.S1_at

Description gb:AK070179.1
DB_XREF= gi:32980203
TID=Os.52970.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52970 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044M21, full insert sequence.
FL= gb:AK070179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1452011/11Nucleotide-sensitive chloride conductance regulator family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14460Os.26886.3.S1_x_at3/113+7838291..7839168transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14470Os.26886.1.S1_x_at9/113+7839813..7841638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14470OsAffx.16244.1.S1_x_at1/113+7839813..7841638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14480OsAffx.26148.1.S1_at6/113+7842593..7843831hypothetical protein
LOC_Os03g14480OsAffx.26148.1.S1_x_at5/113+7842593..7843831hypothetical protein
LOC_Os03g14490Os.26886.2.S1_s_at6/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.26886.6.S1_s_at5/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490OsAffx.16467.1.S1_at4/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.20521.1.S2_at1/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14500Os.54824.1.S1_at11/113+7850547..7852429expressed protein
LOC_Os03g14510Os.52924.1.S1_at11/113+7853590..7857478Immature colon carcinoma transcript 1 protein precursor, putative, expressed
LOC_Os03g14520Os.52970.1.S1_at11/113+7860293..7863387Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os03g14530Os.9027.1.S1_at11/113+7863868..786584540S ribosomal protein S20, putative, expressed
LOC_Os03g14540Os.39979.1.A1_at11/113+7868377..7870396NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g14550OsAffx.3242.1.S1_at10/113+7874298..7874936GAST1 protein precursor, putative
LOC_Os03g14560OsAffx.12860.1.S1_at11/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14560Os.46470.2.S1_x_at1/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14570Os.12766.1.S1_at11/113+7886105..7886959expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006884biological_processregulation of cell volume
GO:0005216molecular_functionion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52970.1.S1_at--1063--791Chr03:7862458..7862482 (25 bp)
ATGGTCTACATGACCTTGGTCGTTC
LOC_Os03g14520
Os.52970.1.S1_at--48--7811Chr03:7862475..7862845 (25 bp)
GGTCGTTCTGTACGTGAGCTTCAAA
LOC_Os03g14520
Os.52970.1.S1_at--902--3571Chr03:7862920..7862944 (25 bp)
CATTTTACTTGTTCCGTTCCTTGAG
LOC_Os03g14520
Os.52970.1.S1_at--113--5711Chr03:7862947..7862971 (25 bp)
GACTATGTCATTGGTTCGTCTGTAG
LOC_Os03g14520
Os.52970.1.S1_at--132--9411Chr03:7862962..7862986 (25 bp)
TCGTCTGTAGATTACCACTGATGCT
LOC_Os03g14520
Os.52970.1.S1_at--795--3331Chr03:7862977..7863001 (25 bp)
CACTGATGCTGCTTGGTTCGCAATA
LOC_Os03g14520
Os.52970.1.S1_at--643--3091Chr03:7862998..7863022 (25 bp)
AATACTTGCTTCTTCTACTTCCTTT
LOC_Os03g14520
Os.52970.1.S1_at--70--10311Chr03:7863020..7863044 (25 bp)
TTTCCCTCTTTCTTGTTCTATAGGA
LOC_Os03g14520
Os.52970.1.S1_at--728--5971Chr03:7863081..7863105 (25 bp)
GAGAAAAAGGTCTTGCTGCTGGTCA
LOC_Os03g14520
Os.52970.1.S1_at--240--10651Chr03:7863209..7863233 (25 bp)
TTCCCTTGTATATCATGGCACTGTT
LOC_Os03g14520
Os.52970.1.S1_at--344--1751Chr03:7863296..7863320 (25 bp)
ACCTTTCCCTATCTTTACAATCTGA
LOC_Os03g14520
Target Sequence 
ATGGTCTACATGACCTTGGTCGTTCTGTACGTGAGCTTCAAATTGATGACCAGCGTTTCGAGGATGCTGAGGAAGAAGAC
GAGATCCAAGAAAATGGACATTAGAAGCAGAATGTTCATTTTACTTGTTCCGTTCCTTGAGGGGACTATGTCATTGGTTC
GTCTGTAGATTACCACTGATGCTGCTTGGTTCGCAATACTTGCTTCTTCTACTTCCTTTCCCTCTTTCTTGTTCTATAGG
ATCAACATCTCTAGGGAGCATCGATGGTAACTTTTGTGAGAAAAAGGTCTTGCTGCTGGTCAAGAATGTAACTTGTAGAG
CATGATGGTGAATCGAGTGAAATTAGTTCGATACTTTTGATCTGACAGATAGGAGGGGAAATCGGGAAAAGAAATATGTT
CTCTTTTCCCTTGTATATCATGGCACTGTTGTGTTATCATTTAGGATTTAAAGATTTAAATGCCAAACTGGATGGAATTG
GGACATATTTCTACCTTTCCCTATCTTTACAATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis