Browse Element(s) Details


Os.9027.1.S1_at

Description gb:AK062522.1
DB_XREF= gi:32972540
TID=Os.9027.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9027 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-D06, full insert sequence.
FL= gb:AK062522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1453011/1140S ribosomal protein S20, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14460Os.26886.3.S1_x_at3/113+7838291..7839168transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14470Os.26886.1.S1_x_at9/113+7839813..7841638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14470OsAffx.16244.1.S1_x_at1/113+7839813..7841638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14480OsAffx.26148.1.S1_at6/113+7842593..7843831hypothetical protein
LOC_Os03g14480OsAffx.26148.1.S1_x_at5/113+7842593..7843831hypothetical protein
LOC_Os03g14490Os.26886.2.S1_s_at6/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.26886.6.S1_s_at5/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490OsAffx.16467.1.S1_at4/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.20521.1.S2_at1/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14500Os.54824.1.S1_at11/113+7850547..7852429expressed protein
LOC_Os03g14510Os.52924.1.S1_at11/113+7853590..7857478Immature colon carcinoma transcript 1 protein precursor, putative, expressed
LOC_Os03g14520Os.52970.1.S1_at11/113+7860293..7863387Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os03g14530Os.9027.1.S1_at11/113+7863868..786584540S ribosomal protein S20, putative, expressed
LOC_Os03g14540Os.39979.1.A1_at11/113+7868377..7870396NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g14550OsAffx.3242.1.S1_at10/113+7874298..7874936GAST1 protein precursor, putative
LOC_Os03g14560OsAffx.12860.1.S1_at11/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14560Os.46470.2.S1_x_at1/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14570Os.12766.1.S1_at11/113+7886105..7886959expressed protein
LOC_Os03g14580Os.12336.1.S1_at11/113+7890746..7893321Rap8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9027.1.S1_at--418--5171Chr03:7864884..7864905 (22 bp)
GCAAGTCTCCCTGTGGTGAAGGAAC
LOC_Os03g14530
Os.9027.1.S1_at--1149--10411Chr03:7865489..7865513 (25 bp)
TTATCAGCTCCCCTGATGTGGTGAA
LOC_Os03g14530
Os.9027.1.S1_at--156--191Chr03:7865596..7865620 (25 bp)
ATTTACCTTCTAGTTTTGTGCGCTA
LOC_Os03g14530
Os.9027.1.S1_at--1100--7451Chr03:7865637..7865661 (25 bp)
GTGTCGCGTGTTAAATTGGTCCTTG
LOC_Os03g14530
Os.9027.1.S1_at--885--2951Chr03:7865665..7865689 (25 bp)
AATGGCACCTTCTTTGTTCAGGAGT
LOC_Os03g14530
Os.9027.1.S1_at--982--6831Chr03:7865700..7865724 (25 bp)
GTTTCTCAACACACCTCGATGGAGG
LOC_Os03g14530
Os.9027.1.S1_at--415--8031Chr03:7865720..7865744 (25 bp)
GGAGGGTGACACTCTGGCTCAGCTT
LOC_Os03g14530
Os.9027.1.S1_at--2--10671Chr03:7865743..7865767 (25 bp)
TTCCGTCCTGTGCTGTCATCTATAG
LOC_Os03g14530
Os.9027.1.S1_at--145--9551Chr03:7865758..7865782 (25 bp)
TCATCTATAGCTGTTTGGTCGTTTA
LOC_Os03g14530
Os.9027.1.S1_at--619--9691Chr03:7865793..7865817 (25 bp)
TCACTTTTATTCTTTGGCCCCAAAT
LOC_Os03g14530
Os.9027.1.S1_at--400--8411Chr03:7865808..7865832 (25 bp)
GGCCCCAAATGTGTGTCACGCAGGA
LOC_Os03g14530
Target Sequence 
GCAAGTCTCCCTGTGGTGAAGGAACAAACACCTGGGATCGGTTTGAGTTCCGCATCCACAAGAGGGTGATTGACCTTATC
AGCTCCCCTGATGTGGTGAAGCAGATAACCTCCATAACAATTGAACCTGGTGTTGAGGTTGAGGTGACAATAGCAGATGT
GTAATGATGCAATGCCGAGATTATTTACCTTCTAGTTTTGTGCGCTAGAATGTTTGTTGTTGTGTGTCGCGTGTTAAATT
GGTCCTTGTGCAATGGCACCTTCTTTGTTCAGGAGTAATCTATGTTGTTTCTCAACACACCTCGATGGAGGGTGACACTC
TGGCTCAGCTTCCGTCCTGTGCTGTCATCTATAGCTGTTTGGTCGTTTACATATCATTTTCACTTTTATTCTTTGGCCCC
AAATGTGTGTCACGCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9027.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis