Browse Element(s) Details


Os.54824.1.S1_at

Description gb:AK106841.1
DB_XREF= gi:32992050
TID=Os.54824.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-H06, full insert sequence.
FL= gb:AK106841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1450011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14450Os.10756.1.S1_at11/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.57462.1.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.2232.3.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14460Os.26886.3.S1_x_at3/113+7838291..7839168transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14470Os.26886.1.S1_x_at9/113+7839813..7841638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14470OsAffx.16244.1.S1_x_at1/113+7839813..7841638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14480OsAffx.26148.1.S1_at6/113+7842593..7843831hypothetical protein
LOC_Os03g14480OsAffx.26148.1.S1_x_at5/113+7842593..7843831hypothetical protein
LOC_Os03g14490Os.26886.2.S1_s_at6/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.26886.6.S1_s_at5/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490OsAffx.16467.1.S1_at4/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.20521.1.S2_at1/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14500Os.54824.1.S1_at11/113+7850547..7852429expressed protein
LOC_Os03g14510Os.52924.1.S1_at11/113+7853590..7857478Immature colon carcinoma transcript 1 protein precursor, putative, expressed
LOC_Os03g14520Os.52970.1.S1_at11/113+7860293..7863387Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os03g14530Os.9027.1.S1_at11/113+7863868..786584540S ribosomal protein S20, putative, expressed
LOC_Os03g14540Os.39979.1.A1_at11/113+7868377..7870396NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g14550OsAffx.3242.1.S1_at10/113+7874298..7874936GAST1 protein precursor, putative
LOC_Os03g14560OsAffx.12860.1.S1_at11/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14560Os.46470.2.S1_x_at1/113+7875991..7880726Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54824.1.S1_at--482--7671Chr03:7852043..7852067 (25 bp)
GGGTTCCACGTGTACGTCGCCTGCG
LOC_Os03g14500
Os.54824.1.S1_at--369--7351Chr03:7852081..7852105 (25 bp)
GTGCAAGGTGGTGTGCTTCTACAGC
LOC_Os03g14500
Os.54824.1.S1_at--1112--3411Chr03:7852135..7852159 (25 bp)
CAGAGATGGCGGGAGCATCGCCAAC
LOC_Os03g14500
Os.54824.1.S1_at--6--791Chr03:7852191..7852215 (25 bp)
ATGTGAATGGGAGTGCTACAGACGC
LOC_Os03g14500
Os.54824.1.S1_at--1068--3411Chr03:7852209..7852233 (25 bp)
CAGACGCGGTGGATGGTTGTAATAA
LOC_Os03g14500
Os.54824.1.S1_at--1096--391Chr03:7852233..7852257 (25 bp)
ATCAGAGCAGTAGCGTAGTTACATA
LOC_Os03g14500
Os.54824.1.S1_at--318--7471Chr03:7852294..7852318 (25 bp)
GTGTGGTTAAAACAGGACCTGCATT
LOC_Os03g14500
Os.54824.1.S1_at--361--2471Chr03:7852304..7852328 (25 bp)
AACAGGACCTGCATTTTTACTTTTG
LOC_Os03g14500
Os.54824.1.S1_at--662--7611Chr03:7852340..7852364 (25 bp)
GGGACTTTGTCCCAACTTTATGTTG
LOC_Os03g14500
Os.54824.1.S1_at--278--3231Chr03:7852352..7852376 (25 bp)
CAACTTTATGTTGATTTCGTTCGTG
LOC_Os03g14500
Os.54824.1.S1_at--1084--6511Chr03:7852364..7852388 (25 bp)
GATTTCGTTCGTGTTTGTAGCTTTG
LOC_Os03g14500
Target Sequence 
GGGTTCCACGTGTACGTCGCCTGCGCCGGCGTGGTGAAGTGCAAGGTGGTGTGCTTCTACAGCAGCAGCAGCAGCAGCCG
CACCGGCGGCCACAGAGATGGCGGGAGCATCGCCAACGGGTCTGTGGGGTTGGGGAGTAGCTGTAGCGATGTGAATGGGA
GTGCTACAGACGCGGTGGATGGTTGTAATAATCAGAGCAGTAGCGTAGTTACATAGGTAAAACAAACACGACCATTTTTT
TTACTGTATTTGTGTGGTTAAAACAGGACCTGCATTTTTACTTTTGTGTGAATACGGGGGACTTTGTCCCAACTTTATGT
TGATTTCGTTCGTGTTTGTAGCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis