Browse Element(s) Details


Os.52924.1.S1_at

Description gb:AK069944.1
DB_XREF= gi:32979968
TID=Os.52924.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52924 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035H14, full insert sequence.
FL= gb:AK069944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1451011/11Immature colon carcinoma transcript 1 protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14450Os.10756.1.S1_at11/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.57462.1.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.2232.3.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14460Os.26886.3.S1_x_at3/113+7838291..7839168transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14470Os.26886.1.S1_x_at9/113+7839813..7841638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14470OsAffx.16244.1.S1_x_at1/113+7839813..7841638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14480OsAffx.26148.1.S1_at6/113+7842593..7843831hypothetical protein
LOC_Os03g14480OsAffx.26148.1.S1_x_at5/113+7842593..7843831hypothetical protein
LOC_Os03g14490Os.26886.2.S1_s_at6/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.26886.6.S1_s_at5/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490OsAffx.16467.1.S1_at4/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.20521.1.S2_at1/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14500Os.54824.1.S1_at11/113+7850547..7852429expressed protein
LOC_Os03g14510Os.52924.1.S1_at11/113+7853590..7857478Immature colon carcinoma transcript 1 protein precursor, putative, expressed
LOC_Os03g14520Os.52970.1.S1_at11/113+7860293..7863387Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os03g14530Os.9027.1.S1_at11/113+7863868..786584540S ribosomal protein S20, putative, expressed
LOC_Os03g14540Os.39979.1.A1_at11/113+7868377..7870396NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g14550OsAffx.3242.1.S1_at10/113+7874298..7874936GAST1 protein precursor, putative
LOC_Os03g14560OsAffx.12860.1.S1_at11/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14560Os.46470.2.S1_x_at1/113+7875991..7880726Cytochrome P450 family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52924.1.S1_at--613--51Chr03:7856391..7856415 (25 bp)
ATTGATGCTGCATCCTATGTACCTC
LOC_Os03g14510
Os.52924.1.S1_at--443--5531Chr03:7856448..7856934 (25 bp)
GAAAAAATTGCTGCAGCCGCTGAAA
LOC_Os03g14510
Os.52924.1.S1_at--548--311Chr03:7857033..7857057 (25 bp)
ATACCTGTATTTCGTGCCCTTTTGA
LOC_Os03g14510
Os.52924.1.S1_at--1049--10751Chr03:7857054..7857078 (25 bp)
TTGAGGTGATCAAGCTTCCCGCATG
LOC_Os03g14510
Os.52924.1.S1_at--538--10651Chr03:7857069..7857173 (25 bp)
TTCCCGCATGTAACTCAGGTTCTGA
LOC_Os03g14510
Os.52924.1.S1_at--1103--5611Chr03:7857172..7857196 (25 bp)
GACAACTAGTATTTGCTCCGCGTGG
LOC_Os03g14510
Os.52924.1.S1_at--717--4831Chr03:7857217..7857241 (25 bp)
GCTCACCTGATCCTTGTGGCAGTAA
LOC_Os03g14510
Os.52924.1.S1_at--648--1691Chr03:7857310..7857334 (25 bp)
AGCCAGTTTTTGCTCCATCAATTGG
LOC_Os03g14510
Os.52924.1.S1_at--354--3551Chr03:7857342..7857366 (25 bp)
CATCTGACGGGAAAACACTGCCTTT
LOC_Os03g14510
Os.52924.1.S1_at--144--1111Chr03:7857390..7857414 (25 bp)
AGTGGTCCTGATCCCTGAACTTATC
LOC_Os03g14510
Os.52924.1.S1_at--295--10411Chr03:7857453..7857477 (25 bp)
TTATAAAGTGTTTGCGTGCCTGTGC
LOC_Os03g14510
Target Sequence 
ATTGATGCTGCATCCTATGTACCTCCACCCCCTTCAGAAGAGCAAAAGAAGAAGGTTGAAAAAATTGCTGCAGCCGCTGA
AAGGAAGAGACTTCAGAAGAAGAAAGTGCTTTCGCAGAAAAAGGAATTTAGGAGGAACAGGACTAGCTGGGATTGACTGC
AAGTTATTTTGCTTAAAATCATACCTGTATTTCGTGCCCTTTTGAGGTGATCAAGCTTCCCGCATGTAACTCAGGTTCTG
ACAACTAGTATTTGCTCCGCGTGGTTCTTGAGCGTGGAGATAGGGCTCACCTGATCCTTGTGGCAGTAAATATCCATGCG
CGACAGGAACAAGTTCCAAACCGGTGAAGACGTATTGGTGAATATGGCGAGTTTCAGAGCCAGTTTTTGCTCCATCAATT
GGAAGGTAGCATCTGACGGGAAAACACTGCCTTTTGTCCTAAAATGCACTGTTTGTCAGTGGTCCTGATCCCTGAACTTA
TCACATGCATCACATGCTACTGTAACAATCATTCACCCAATTATAAAGTGTTTGCGTGCCTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis