Browse Element(s) Details


OsAffx.3242.1.S1_at

Description tigr:9631.m01396
TID=OsAffx.3242.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF051754 GASA5-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1455010/11GAST1 protein precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14500Os.54824.1.S1_at11/113+7850547..7852429expressed protein
LOC_Os03g14510Os.52924.1.S1_at11/113+7853590..7857478Immature colon carcinoma transcript 1 protein precursor, putative, expressed
LOC_Os03g14520Os.52970.1.S1_at11/113+7860293..7863387Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os03g14530Os.9027.1.S1_at11/113+7863868..786584540S ribosomal protein S20, putative, expressed
LOC_Os03g14540Os.39979.1.A1_at11/113+7868377..7870396NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g14550OsAffx.3242.1.S1_at10/113+7874298..7874936GAST1 protein precursor, putative
LOC_Os03g14560OsAffx.12860.1.S1_at11/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14560Os.46470.2.S1_x_at1/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14570Os.12766.1.S1_at11/113+7886105..7886959expressed protein
LOC_Os03g14580Os.12336.1.S1_at11/113+7890746..7893321Rap8, putative, expressed
LOC_Os03g14590Os.27624.1.S1_at11/113+7893606..789730839 kDa EF-Hand containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3242.1.S1_at--35--10731Chr03:7874328..7874349 (22 bp)
TTGCTCGCGTTAGCTTTTGTGGCTG
LOC_Os03g14550
OsAffx.3242.1.S1_at--169--5931Chr03:7874464..7874488 (25 bp)
GAGCACGAATGGAGGCTTTTACCGA
LOC_Os03g14550
OsAffx.3242.1.S1_at--217--4891Chr03:7874478..7874585 (25 bp)
GCTTTTACCGACCAGTTGGTGCAGA
LOC_Os03g14550
OsAffx.3242.1.S1_at--400--8611Chr03:7874577..7874601 (25 bp)
TGGTGCAGAAGGTTCTGTCTCCATA
LOC_Os03g14550
OsAffx.3242.1.S1_at--174--8731NONE
TGTCTCCATAGAAGAATGCCCACAG
NONE
OsAffx.3242.1.S1_at--423--591Chr03:7874756..7874780 (25 bp)
ATGCCCACAGAAATGCGACTACCGT
LOC_Os03g14550
OsAffx.3242.1.S1_at--1095--6671Chr03:7874779..7874803 (25 bp)
GTTGCTCGGCAACAAAGCGCCAGGA
LOC_Os03g14550
OsAffx.3242.1.S1_at--956--8171Chr03:7874801..7874825 (25 bp)
GGAACCATGCCTCAAGTACTGCAAT
LOC_Os03g14550
OsAffx.3242.1.S1_at--23--1191Chr03:7874815..7874839 (25 bp)
AGTACTGCAATATCTGCTGCCAGAA
LOC_Os03g14550
OsAffx.3242.1.S1_at--263--4791Chr03:7874830..7874854 (25 bp)
GCTGCCAGAAATGCTTGTGCGTTCC
LOC_Os03g14550
OsAffx.3242.1.S1_at--674--6111Chr03:7874880..7874904 (25 bp)
GAGTGCCCATGCTACAACAATTTGA
LOC_Os03g14550
Target Sequence 
TTGCTCGCGTTAGCTTTTGTGGCTGAAGTTTCAGGGAGCACGAATGGAGGCTTTTACCGACCAGTTGGTGCAGAAGGTTC
TGTCTCCATAGAAGAATGCCCACAGAAATGCGACTACCGTTGCTCGGCAACAAAGCGCCAGGAACCATGCCTCAAGTACT
GCAATATCTGCTGCCAGAAATGCTTGTGCGTTCCATCCGGCACGTCCGGGAACAAGGAAGAGTGCCCATGCTACAACAAT
TTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis