Browse Element(s) Details


Os.27624.1.S1_at

Description gb:AK121051.1
DB_XREF= gi:37990674
TID=Os.27624.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-207-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055G22, full insert sequence.
FL= gb:AK061120.1 gb:AK121051.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1459011/1139 kDa EF-Hand containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14540Os.39979.1.A1_at11/113+7868377..7870396NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g14550OsAffx.3242.1.S1_at10/113+7874298..7874936GAST1 protein precursor, putative
LOC_Os03g14560OsAffx.12860.1.S1_at11/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14560Os.46470.2.S1_x_at1/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14570Os.12766.1.S1_at11/113+7886105..7886959expressed protein
LOC_Os03g14580Os.12336.1.S1_at11/113+7890746..7893321Rap8, putative, expressed
LOC_Os03g14590Os.27624.1.S1_at11/113+7893606..789730839 kDa EF-Hand containing protein, putative, expressed
LOC_Os03g14600OsAffx.12861.2.S1_x_at11/113+7903995..7907028hAT family dimerisation domain containing protein
LOC_Os03g14600OsAffx.12861.3.S1_x_at9/113+7903995..7907028hAT family dimerisation domain containing protein
LOC_Os03g14610Os.37466.1.S1_s_at11/113+7908065..7913013TB2/DP1, HVA22 family protein, expressed
LOC_Os03g14610Os.8643.1.S1_at8/113+7908065..7913013TB2/DP1, HVA22 family protein, expressed
LOC_Os03g14620NANA3+7917543..7919012transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27624.1.S1_at--41--10471Chr03:7894222..7894242 (21 bp)
TTACGGTGCCGTTAATCAGGTGGAT
LOC_Os03g14590
Os.27624.1.S1_at--818--6211Chr03:7894099..7894123 (25 bp)
GAGGCGCTCAAGACAGTTAATGCTG
LOC_Os03g14590
Os.27624.1.S1_at--178--2491Chr03:7893997..7894021 (25 bp)
AACAGACAGCCGATTTTCGTCTCGA
LOC_Os03g14590
Os.27624.1.S1_at--293--10291Chr03:7893983..7894007 (25 bp)
TTTCGTCTCGAACAGCACCGTAGTT
LOC_Os03g14590
Os.27624.1.S1_at--515--6751Chr03:7893961..7893985 (25 bp)
GTTCACGAGCCATTGTTCAGTTCAT
LOC_Os03g14590
Os.27624.1.S1_at--566--9631Chr03:7893945..7893969 (25 bp)
TCAGTTCATCCGCAATTTTATCCTC
LOC_Os03g14590
Os.27624.1.S1_at--397--10351Chr03:7893929..7893953 (25 bp)
TTTATCCTCGCCTCCAGTGAAATCA
LOC_Os03g14590
Os.27624.1.S1_at--1075--4471Chr03:7893835..7893859 (25 bp)
GCCTGTGATGTTGCTTTTTTGTCTG
LOC_Os03g14590
Os.27624.1.S1_at--1135--10351Chr03:7893820..7893844 (25 bp)
TTTTTGTCTGATCAAGCACTGCGGG
LOC_Os03g14590
Os.27624.1.S1_at--802--5731Chr03:7893785..7893809 (25 bp)
GACTGGCTACAACCTGACGAGATGT
LOC_Os03g14590
Os.27624.1.S1_at--621--1431Chr03:7893758..7893782 (25 bp)
AGAACACTTCCGTCAGTCTTGCTAG
LOC_Os03g14590
Target Sequence 
TTACGGTGCCGTTAATCAGGTGGATGCCGTGGTGAATGAGGCGCTCAAGACAGTTAATGCTGATGAAAGAACAGCGGTAG
ACGAGGCCGGGTTCAAGAAACTACTGACAGATATCCTTAGGGCAGTGATGATGCAGCTGAACAGACAGCCGATTTTCGTC
TCGAACAGCACCGTAGTTCACGAGCCATTGTTCAGTTCATCCGCAATTTTATCCTCGCCTCCAGTGAAATCATCGCCGAG
TGAATAAATTAAACCATATATGAATGTTAATGTGCTTGACAGTGGTCTATCTGTAAGCAGTGCCTGTGATGTTGCTTTTT
TGTCTGATCAAGCACTGCGGGGGCATGTATAGACTGGCTACAACCTGACGAGATGTAAAGAACACTTCCGTCAGTCTTGC
TAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis