Browse Element(s) Details


Os.39979.1.A1_at

Description gb:AK121154.1
DB_XREF= gi:37990777
TID=Os.39979.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.39979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078O05, full insert sequence.
FL= gb:AK121154.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1454011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14480OsAffx.26148.1.S1_at6/113+7842593..7843831hypothetical protein
LOC_Os03g14480OsAffx.26148.1.S1_x_at5/113+7842593..7843831hypothetical protein
LOC_Os03g14490Os.26886.2.S1_s_at6/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.26886.6.S1_s_at5/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490OsAffx.16467.1.S1_at4/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.20521.1.S2_at1/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14500Os.54824.1.S1_at11/113+7850547..7852429expressed protein
LOC_Os03g14510Os.52924.1.S1_at11/113+7853590..7857478Immature colon carcinoma transcript 1 protein precursor, putative, expressed
LOC_Os03g14520Os.52970.1.S1_at11/113+7860293..7863387Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os03g14530Os.9027.1.S1_at11/113+7863868..786584540S ribosomal protein S20, putative, expressed
LOC_Os03g14540Os.39979.1.A1_at11/113+7868377..7870396NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g14550OsAffx.3242.1.S1_at10/113+7874298..7874936GAST1 protein precursor, putative
LOC_Os03g14560OsAffx.12860.1.S1_at11/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14560Os.46470.2.S1_x_at1/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14570Os.12766.1.S1_at11/113+7886105..7886959expressed protein
LOC_Os03g14580Os.12336.1.S1_at11/113+7890746..7893321Rap8, putative, expressed
LOC_Os03g14590Os.27624.1.S1_at11/113+7893606..789730839 kDa EF-Hand containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0050378molecular_functionUDP-glucuronate 4-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39979.1.A1_at--8--2491Chr03:7869857..7869881 (25 bp)
AACAGCAAGTCTTCGCGAGGTCGGA
LOC_Os03g14540
Os.39979.1.A1_at--947--7931Chr03:7869910..7869934 (25 bp)
GGATATTCATTTTCTTCATGGCCTT
LOC_Os03g14540
Os.39979.1.A1_at--311--8431Chr03:7869929..7869953 (25 bp)
GGCCTTCTTCTGACGGTGTGTATCA
LOC_Os03g14540
Os.39979.1.A1_at--107--6371Chr03:7869962..7869986 (25 bp)
GATCCAGTGCTTAACTCATCAGGTC
LOC_Os03g14540
Os.39979.1.A1_at--1124--8891Chr03:7869987..7870011 (25 bp)
TGAGAGGCTCGTTTTGCTCAGCACG
LOC_Os03g14540
Os.39979.1.A1_at--459--9091Chr03:7870001..7870025 (25 bp)
TGCTCAGCACGTCCTTCAAGTGAAA
LOC_Os03g14540
Os.39979.1.A1_at--339--8972Chr03:7870052..7870076 (25 bp)
TGAAAAAACCCTTCCACTCTATTGG
LOC_Os03g14540
Os.39979.1.A1_at--302--10231Chr03:7870071..7870095 (25 bp)
TATTGGCTTCCCCATAGCTGAGCGT
LOC_Os03g14540
Os.39979.1.A1_at--896--5871Chr03:7870090..7870114 (25 bp)
GAGCGTTCAAATCCTAGTTCCATTA
LOC_Os03g14540
Os.39979.1.A1_at--804--4871Chr03:7870283..7870307 (25 bp)
GCTATCTCTCTGTACTTTGCATTGT
LOC_Os03g14540
Os.39979.1.A1_at--41--10051Chr03:7870321..7870345 (25 bp)
TAGATGCTCGGTCTGTATTTACTGC
LOC_Os03g14540
Target Sequence 
AACAGCAAGTCTTCGCGAGGTCGGAGTGGCAACACAAGCAGTGCAAGATGATTGGATATTCATTTTCTTCATGGCCTTCT
TCTGACGGTGTGTATCATTGTTCTAGATCCAGTGCTTAACTCATCAGGTCTGAGAGGCTCGTTTTGCTCAGCACGTCCTT
CAAGTGAAACAAAACGATCATTAATTAGCTTGTATTGAAAAAACCCTTCCACTCTATTGGCTTCCCCATAGCTGAGCGTT
CAAATCCTAGTTCCATTAGCTGGTTCTTAGGATGANCAATTGTAGGAAGAACTGGGTTGGGTTCTNGNGGNNNAGGCTGT
GAGTTGCAAAGACTATAATAGATTCTTTTAGTGACATTTTGTACCACGGGAGAGAAGGAAGTACACCATGACTGTTTCGT
TTGTTCAATTGAAATAGCTCTGATCAACCTGCTATCTCTCTGTACTTTGCATTGTCATGTTACTTTTATAGATGCTCGGT
CTGTATTTACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39979.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis