Browse Element(s) Details


Os.12308.1.S1_at

Description gb:AK066931.1
DB_XREF= gi:32976949
TID=Os.12308.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12308 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091O15, full insert sequence.
FL= gb:AK100636.1 gb:AK066931.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1933411/11large secreted protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19310OsAffx.8264.1.S1_at11/1110+9506620..9509870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19314Os.51388.1.S1_at1/1110+9512865..9513176hypothetical protein
LOC_Os10g19318NANA10+9514123..9514413hypothetical protein
LOC_Os10g19322NANA10+9515290..9518594transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19326Os.47463.1.S1_x_at5/1110+9521857..9525557transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19326Os.14491.2.S1_x_at4/1110+9521857..9525557transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19330NANA10+9528379..9528894hypothetical protein
LOC_Os10g19334Os.12308.1.S1_at11/1110+9529766..9536654large secreted protein, putative, expressed
LOC_Os10g19338NANA10+9538524..9542812retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19342NANA10+9547055..9549128IQ calmodulin-binding motif family protein
LOC_Os10g19810OsAffx.20497.1.S1_at11/1110+9550634..9551206transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19820OsAffx.18303.1.S1_at10/1110+9552396..9554233hypothetical protein
LOC_Os10g19830NANA10+9555484..9558788transposon protein, putative, Mariner sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12308.1.S1_at--405--5151Chr10:9530305..9530329 (25 bp)
GCAACGGTGTGGTCTAGCAACCCAA
LOC_Os10g19334
Os.12308.1.S1_at--488--9991Chr10:9530291..9530315 (25 bp)
TAGCAACCCAAAATGCACCCTGAGG
LOC_Os10g19334
Os.12308.1.S1_at--687--4271Chr10:9530273..9530297 (25 bp)
CCTGAGGCTGCACTACGGTGAACAA
LOC_Os10g19334
Os.12308.1.S1_at--105--2231Chr10:9530252..9530276 (25 bp)
ACAAGTTGCTATGGTGACAGTTTTA
LOC_Os10g19334
Os.12308.1.S1_at--593--6851Chr10:9530199..9530223 (25 bp)
GTTTGCAGTGCGTGGAGACATACAT
LOC_Os10g19334
Os.12308.1.S1_at--617--331Chr10:9530180..9530204 (25 bp)
ATACATGGCCCCTTGACAATTGAAC
LOC_Os10g19334
Os.12308.1.S1_at--552--6251Chr10:9530051..9530075 (25 bp)
GATGGTGCATGCTCTTCAAGATAGT
LOC_Os10g19334
Os.12308.1.S1_at--639--6532Chr10:9529975..9529999 (25 bp)
GATTTCTGGTGTATGGCAACTTTAT
LOC_Os10g19334
Os.12308.1.S1_at--113--491Chr10:9529952..9529976 (25 bp)
ATCTGTTGTATATATGTCTACCATA
LOC_Os10g19334
Os.12308.1.S1_at--483--6152Chr10:9529818..9529842 (25 bp)
GAGGTTTGTACTTTTGTATGTCTTT
LOC_Os10g19334
Os.12308.1.S1_at--615--111Chr10:9529790..9529814 (25 bp)
ATTCTTGTAGTGGATGCTTCAATCA
LOC_Os10g19334
Target Sequence 
GCAACGGTGTGGTCTAGCAACCCAAAATGCACCCTGAGGCTGCACTACGGTGAACAAGTTGCTATGGTGACAGTTTTAGG
GGGCAATGTTTACAGGTTCAATGGGGGTTTGCAGTGCGTGGAGACATACATGGCCCCTTGACAATTGAACNGCCCTNTGC
ATTTCAGTGTNTACGGTTTTTNATCGTTTTAGAGTATTTTGTGTGGACATGATGATGAATTGATGCGTGCATTGGAATAA
TTTGCTTTTGTAAAAGATGGTGCATGCTCTTCAAGATAGTCAAGGAGCTGTGCATGGATGTCTNTGCTGTATATGGCTAT
GATGTAGTATTGATTTCTGGTGTATGGCAACTTTATCTGTTGTATATATGTCTACCATAATCTTTTACTAGGATTTAGTA
GAAAGAATGTGACTATTTCAGTTATAGATTACCTTTTTCAAAACTGTATGATGGNACTATTTTGTTGAGTTATTTTTTAA
AACTTTCAAGAGGTTTGTACTTTTGTATGTCTTTTAGATTCTTGTAGTGGATGCTTCAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis