Browse Element(s) Details


Os.12346.1.S1_at

Description gb:AK068901.1
DB_XREF= gi:32978926
TID=Os.12346.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) laccase (P0406G08.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170B10, full insert sequence.
FL= gb:AK068901.1 gb:AK059101.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6248011/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62440Os.13498.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_x_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440OsAffx.2388.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.52574.2.S1_x_at1/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62450NANA1+36481330..36481541hypothetical protein
LOC_Os01g62460Os.11866.1.S1_at11/111+36485157..36488383SCARECROW, putative, expressed
LOC_Os01g62469OsAffx.21751.1.S1_at11/111+36491268..36491989NA
LOC_Os01g62480Os.12346.1.S1_at11/111+36492802..36495788Multicopper oxidase family protein, expressed
LOC_Os01g62480Os.54525.1.S1_x_at1/111+36492802..36495788Multicopper oxidase family protein, expressed
LOC_Os01g62490Os.9615.1.S1_at11/111+36504141..36506976Multicopper oxidase family protein, expressed
LOC_Os01g62500Os.33529.1.S1_at11/111+36509312..36514823AFG3-like protein 2, putative, expressed
LOC_Os01g62510OsAffx.9554.1.S1_at11/111+36515551..36518530WRKY DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12346.1.S1_at--686--9111Chr01:36493444..36493468 (25 bp)
TGCTGCGGTACAACACGTCGGTGGA
LOC_Os01g62480
Os.12346.1.S1_at--612--9031Chr01:36493090..36493114 (25 bp)
TGCACTGTCATTTGGAGGCGCACAC
LOC_Os01g62480
Os.12346.1.S1_at--730--6251Chr01:36493031..36493055 (25 bp)
GATGGGAGCCATCCGAACCAGAAGC
LOC_Os01g62480
Os.12346.1.S1_at--71--7251Chr01:36492993..36493017 (25 bp)
GTCCGATCTGCCCAAATGCTAGTCG
LOC_Os01g62480
Os.12346.1.S1_at--879--611Chr01:36492978..36493002 (25 bp)
ATGCTAGTCGGGACCTTACCACAGA
LOC_Os01g62480
Os.12346.1.S1_at--1063--2131Chr01:36492958..36492982 (25 bp)
ACAGATGCCGTTGATTCTTCTTTCC
LOC_Os01g62480
Os.12346.1.S1_at--934--10291Chr01:36492938..36492962 (25 bp)
TTTCCTCATTTCATTTGTTCGCCAA
LOC_Os01g62480
Os.12346.1.S1_at--156--3131Chr01:36492915..36492939 (25 bp)
AATTTGCGATTGCTTTCTCCTGAAG
LOC_Os01g62480
Os.12346.1.S1_at--1120--6531Chr01:36492888..36492912 (25 bp)
GATTTTAGTGTGTTAGCCCGTTCTT
LOC_Os01g62480
Os.12346.1.S1_at--497--1631Chr01:36492874..36492898 (25 bp)
AGCCCGTTCTTAGCTAACTTTTGTG
LOC_Os01g62480
Os.12346.1.S1_at--803--5631Chr01:36492803..36492827 (25 bp)
GACACTGTTTTGATGCTTCTTTGAA
LOC_Os01g62480
Target Sequence 
TGCTGCGGTACAACACGTCGGTGGAGCTGGTGATGCAGGACACCAGCATCCTGGGCATCGAGAGCCACCCGCTGCACCTG
CACGGCTTCAACTTCTTCGTGATCGGCCAAGGGTTCGGCAACTACGACGCCGTGAACGACCCGGCCAAGTTCAACCTCGT
CGACCCCGTCGAGCGCAACACCGTCGGCGTGCCGGCCGGCGGATGGGTGGCCATCCGTTTCCTCGCTGACAACCCAGGTG
TATGGTTCATGCACTGTCATTTGGAGGCGCACACGACGTGGGGCCTGAGGATGGCATGGCTAGTGTTGGATGGGAGCCAT
CCGAACCAGAAGCTGCTTCCTCCGCCGTCCGATCTGCCCAAATGCTAGTCGGGACCTTACCACAGATGCCGTTGATTCTT
CTTTCCTCATTTCATTTGTTCGCCAATTTGCGATTGCTTTCTCCTGAAGGAGATTTTAGTGTGTTAGCCCGTTCTTAGCT
AACTTTTGTGACATTATTTTGTTCTTTTTTCTTTTATTTGTGTACAACTATACAATGACACTGTTTTGATGCTTCTTTGA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis