Browse Element(s) Details


Os.12409.1.S1_at

Description gb:AK062043.1
DB_XREF= gi:32972061
TID=Os.12409.1
CNT=114
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU089749(S14720)~similar to Cicer arietinum ,CAA10129.1~unknown protein (OJ1513_F02.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A07, full insert sequence.
FL= gb:AK062043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g023401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02310NANA7+771120..772854retrotransposon protein, putative, unclassified
LOC_Os07g02319NANA7+777018..777299NA
LOC_Os07g02330Os.38299.1.S1_at11/117+778683..780249Protein phosphatase 2C containing protein, expressed
LOC_Os07g02340Os.12409.1.S1_at1/117+795871..797021expressed protein
LOC_Os07g02350Os.1955.1.S1_at11/117+797805..803486Casein kinase II, alpha chain, putative, expressed
LOC_Os07g02360Os.36023.1.S1_at11/117+807996..810814expressed protein
LOC_Os07g02370OsAffx.8838.1.S1_at11/117+813026..813869hypothetical protein
LOC_Os07g02380OsAffx.5182.1.S1_at11/117+816718..817085hypothetical protein
LOC_Os07g02390OsAffx.28233.1.S1_at11/117+817508..820435hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_at11/117+820767..821977hypothetical protein
LOC_Os07g02400OsAffx.5183.1.S1_x_at11/117+820767..821977hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12409.1.S1_at--747--4591Chr07:796968..796992 (25 bp)
GCGAAGCATCCGAAGAGCGACCTCA
LOC_Os07g02340
Os.12409.1.S1_at--1112--8491Chr07:797028..797052 (25 bp)
TGGCATCTCTCTGCTCAATCAGAAG
NONE
Os.12409.1.S1_at--283--5971Chr07:797060..797084 (25 bp)
GAGAAGCTGCCATAATCCACTAGTA
NONE
Os.12409.1.S1_at--148--3031Chr07:797073..797097 (25 bp)
AATCCACTAGTATCATCTTGTATGC
NONE
Os.12409.1.S1_at--996--3191Chr07:797097..797121 (25 bp)
CAATGACTGGTTGCCCTATGTATGG
NONE
Os.12409.1.S1_at--967--3671Chr07:797151..797175 (25 bp)
CTTTGGTTGTGTGCCTCATCTAAAT
NONE
Os.12409.1.S1_at--966--8731Chr07:797177..797201 (25 bp)
TGTAATGCTCTATCAACCTCTTGTG
NONE
Os.12409.1.S1_at--376--6531Chr07:797223..797247 (25 bp)
GATTTGCTGCCTGTGTTCAGTCAAT
NONE
Os.12409.1.S1_at--492--8811Chr07:797254..797278 (25 bp)
TGTTGCAACATCACTCTTCACTAAT
NONE
Os.12409.1.S1_at--992--3291Chr07:797272..797296 (25 bp)
CACTAATTTCCGGTGTCTCCTGTGG
NONE
Os.12409.1.S1_at--216--2851Chr07:797300..797324 (25 bp)
AAGTCATTGCTTCAACCCAGAGTTT
NONE
Target Sequence 
GCGAAGCATCCGAAGAGCGACCTCACCGCGTGCTTCCCTCACCTCAAGAAATAATGGCGGTGGCATCTCTCTGCTCAATC
AGAAGAGAAAAAGAGAAGCTGCCATAATCCACTAGTATCATCTTGTATGCAATGACTGGTTGCCCTATGTATGGGTCTAA
ACTTTGGTCAGCTGCTGCTGCTTCTTTGGTTGTGTGCCTCATCTAAATATGTAATGCTCTATCAACCTCTTGTGCAACGA
TATTAATCTTGTGTGGATTTGCTGCCTGTGTTCAGTCAATATGTTATGTTGCAACATCACTCTTCACTAATTTCCGGTGT
CTCCTGTGGNACAAGTCATTGCTTCAACCCAGAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis