Browse Element(s) Details


Os.12426.1.S1_s_at

Description gb:AB016030.1
DB_XREF= gi:18146761
GEN=SUMO-1
TID=Os.12426.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12426 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) SUMO-1 mRNA for ubiquitin-related protein, complete cds.
PROD=ubiquitin-related protein
FL= gb:AB016030.1 gb:AK058869.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6895011/11Ubiquitin-like protein SMT3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68920NANA1+40369722..40371101retrotransposon protein, putative, unclassified
LOC_Os01g68930Os.55775.1.S1_at11/111+40382923..40386295expressed protein
LOC_Os01g68940Os.32732.1.S1_at11/111+40388472..40390482Ubiquitin-like protein SMT3, putative, expressed
LOC_Os01g68950Os.34904.1.S1_at11/111+40390922..40393250Ubiquitin-like protein SMT3, putative, expressed
LOC_Os01g68950Os.12426.1.S1_s_at11/111+40390922..40393250Ubiquitin-like protein SMT3, putative, expressed
LOC_Os01g68960OsAffx.23978.1.S1_at11/111+40394670..40396454hypothetical protein
LOC_Os01g68970Os.10258.1.S1_at11/111+40397622..40400613CPR5 protein, putative, expressed
LOC_Os01g68980OsAffx.13846.2.S1_s_at11/111+40401081..40401700hypothetical protein
LOC_Os01g68980OsAffx.13846.1.S1_at4/111+40401081..40401700hypothetical protein
LOC_Os01g68990Os.52238.1.S1_at3/111+40404837..40409259retrotransposon, putative, centromere-specific
LOC_Os01g69000NANA1+40411243..40412598retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0016925biological_processprotein sumoylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12426.1.S1_s_at--449--6251Chr01:40391786..40391810 (25 bp)
GATGGGAACGAGGTATTCTTCCGCA
LOC_Os01g68950
Os.12426.1.S1_s_at--834--5451Chr01:40391781..40391805 (25 bp)
GAACGAGGTATTCTTCCGCATCAAG
LOC_Os01g68950
Os.12426.1.S1_s_at--215--7871Chr01:40391775..40391799 (25 bp)
GGTATTCTTCCGCATCAAGAGATCT
LOC_Os01g68950
Os.12426.1.S1_s_at--1083--4111Chr01:40391765..40391789 (25 bp)
CGCATCAAGAGATCTACGCAGCTGA
LOC_Os01g68950
Os.12426.1.S1_s_at--300--4751Chr01:40391736..40391760 (25 bp)
GCTGATGAACGCCTATTGTGACCGT
LOC_Os01g68950
Os.12426.1.S1_s_at--410--5451Chr01:40391730..40391754 (25 bp)
GAACGCCTATTGTGACCGTCAGTCT
LOC_Os01g68950
Os.12426.1.S1_s_at--480--3691Chr01:40391724..40391748 (25 bp)
CTATTGTGACCGTCAGTCTGTGGAT
LOC_Os01g68950
Os.12426.1.S1_s_at--1082--7371Chr01:40391719..40391743 (25 bp)
GTGACCGTCAGTCTGTGGATATGAA
LOC_Os01g68950
Os.12426.1.S1_s_at--361--3891Chr01:40391707..40391731 (25 bp)
CTGTGGATATGAATGCTATTGCATT
LOC_Os01g68950
Os.12426.1.S1_s_at--724--4871Chr01:40391693..40391717 (25 bp)
GCTATTGCATTCCTATTTGATGGTC
LOC_Os01g68950
Os.12426.1.S1_s_at--84--811Chr01:40391674..40391698 (25 bp)
ATGGTCGTAGGCTCCGTGGCGAGCA
LOC_Os01g68950
Target Sequence 
GATGGGAACGAGGTATTCTTCCGCATCAAGAGATCTACGCAGCTGAAGAAGCTGATGAACGCCTATTGTGACCGTCAGTC
TGTGGATATGAATGCTATTGCATTCCTATTTGATGGTCGTAGGCTCCGTGGCGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12426.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis