Browse Element(s) Details


Os.12449.1.A1_at

Description gb:AK059217.1
DB_XREF= gi:32969235
TID=Os.12449.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C09, full insert sequence.
FL= gb:AK059217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3795011/11Copper-transporting ATPase PAA1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37904Os.8726.3.S1_at11/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S1_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S2_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37920Os.8726.2.S1_at11/118+23882219..23887812Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37930OsAffx.17389.1.S1_s_at10/118+23887808..23889828Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os08g37940Os.56997.1.S1_at11/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37940OsAffx.30715.2.S1_s_at1/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37950Os.12449.1.A1_at11/118+23898429..23906472Copper-transporting ATPase PAA1, putative, expressed
LOC_Os08g37960Os.15015.1.S1_a_at11/118+23907313..23910459transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g37970OsAffx.29578.1.S1_at11/118+23918865..23920364Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g37970Os.57514.1.S1_x_at1/118+23918865..23920364Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0009767biological_processphotosynthetic electron transport
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009941cellular_componentchloroplast envelope
GO:0005375molecular_functioncopper ion transporter activity
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12449.1.A1_at--603--8871Chr08:23905874..23905898 (25 bp)
TGATGTATTACCCAACGCAGCCGAG
LOC_Os08g37950
Os.12449.1.A1_at--803--8551Chr08:23905923..23905947 (25 bp)
TGGAGTGCCTAGCTGACATCCATTT
LOC_Os08g37950
Os.12449.1.A1_at--975--291Chr08:23905986..23906010 (25 bp)
ATAGCAGTAACACGCGTCGCAGAGA
LOC_Os08g37950
Os.12449.1.A1_at--1110--3091Chr08:23906020..23906044 (25 bp)
AATTTGGCCCGGAACTGGATGTCGT
LOC_Os08g37950
Os.12449.1.A1_at--1128--271Chr08:23906046..23906070 (25 bp)
ATAGGTAGTCCTGTCTCGGAGATCA
LOC_Os08g37950
Os.12449.1.A1_at--794--10431Chr08:23906115..23906139 (25 bp)
TTAGGAGAGTTCAGCTGCCGCGTGT
LOC_Os08g37950
Os.12449.1.A1_at--357--6471Chr08:23906198..23906222 (25 bp)
GATACTTCACACACGAGGGCAACAT
LOC_Os08g37950
Os.12449.1.A1_at--292--611Chr08:23906265..23906289 (25 bp)
ATGCTGTAACGTTTTTCCTCTGATA
LOC_Os08g37950
Os.12449.1.A1_at--372--7351Chr08:23906307..23906331 (25 bp)
GTGAAATGACGGTCCGCGTACCAGA
LOC_Os08g37950
Os.12449.1.A1_at--89--2551Chr08:23906331..23906355 (25 bp)
AACTCATGTGGTGGCGTCTCTTAGA
LOC_Os08g37950
Os.12449.1.A1_at--578--8611Chr08:23906405..23906429 (25 bp)
TGGTGATTCGCACAGTTGCACTCAT
LOC_Os08g37950
Target Sequence 
TGATGTATTACCCAACGCAGCCGAGTCAGAGAAAAGTTATCCATCAAAATGGAGTGCCTAGCTGACATCCATTTNTTCAT
GACCGGNTGACCTGCTTTGCCTTAAAGAGTTCATAGCAGTAACACGCGTCGCAGAGAAAACNCAGTAATTTGGCCCGGAA
CTGGATGTCGTGATAGGTAGTCCTGTCTCGGAGATCAGATGCAGTCATAAGAACAAAAGAATAATCAGATAAAGCNCAGG
GTTAGGAGAGTTCAGCTGCCGCGTGTTGGTGTTTTTTTTTTCTTTGAAAAGAGTATTGAGTATGCTAGTATACAGGTACA
GGCCGATACTTCACACACGAGGGCAACATCCTNTCCGATATGTGGTACTTCTTTCATGCATAGTATTTGCTATGCTGTAA
CGTTTTTCCTCTGATAAAAAACANCTATTGACGAGTGAAATGACGGTCCGCGTACCAGAACTCATGTGGTGGCGTCTCTT
AGATACTGTGTAGAGTCGATACTCTTCTGAATTCATTCTCAATTGTTAACCATGGTGATTCGCACAGTTGCACTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12449.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis