Browse Element(s) Details

Os.12625.4.S1_x_at

Description

gb:AF030517.1
DB_XREF= gi:2996095
TID=Os.12625.4
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12625 (NCBI UniGene Cluster)
DEF=Oryza sativa translation elongation factor-1 alpha mRNA, complete cds.
PROD=translation elongation factor-1 alpha
FL= gb:AF030517.1 gb:AK073196.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g08020	8/11	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	8/11	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08010	8/11	Elongation factor 1-alpha, putative
LOC_Os03g08050	5/11	Elongation factor 1-alpha, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g07970	OsAffx.3169.1.S1_s_at	11/11	3	+	4052698..4056735	expressed protein
LOC_Os03g07970	Os.54386.1.S1_at	11/11	3	+	4052698..4056735	expressed protein
LOC_Os03g07970	OsAffx.3169.1.S1_at	10/11	3	+	4052698..4056735	expressed protein
LOC_Os03g07980	Os.53600.1.S1_at	11/11	3	+	4058448..4059167	expressed protein
LOC_Os03g07990	Os.11182.1.S1_at	11/11	3	+	4060778..4064152	GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g08000	Os.18248.1.S1_at	10/11	3	+	4069116..4073025	C3HC4 zinc finger containing protein, putative, expressed
LOC_Os03g08010	Os.12625.1.S1_a_at	11/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.1.S1_x_at	9/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.4.S1_x_at	8/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.6.S1_x_at	7/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.2.S1_x_at	6/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.57463.1.S1_x_at	3/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08020	Os.12625.1.S1_a_at	11/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.1.S1_x_at	9/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.4.S1_x_at	8/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.6.S1_x_at	7/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.2.S1_x_at	6/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.57463.1.S1_x_at	2/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08030	OsAffx.25013.1.S1_at	11/11	3	+	4084016..4084915	expressed protein
LOC_Os03g08040	OsAffx.3170.1.S1_at	11/11	3	+	4086826..4089008	hypothetical protein
LOC_Os03g08050	Os.12625.1.S1_a_at	11/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.1.S1_x_at	6/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.4.S1_x_at	5/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.2.S1_x_at	5/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.6.S1_x_at	4/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.57463.1.S1_x_at	3/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.1.S1_a_at	11/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.1.S1_x_at	9/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.4.S1_x_at	8/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.6.S1_x_at	7/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.2.S1_x_at	5/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.57463.1.S1_x_at	3/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08070	Os.26448.1.A1_at	11/11	3	+	4099099..4106050	copper-translocating P-type ATPase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0005739	cellular_component	mitochondrion
GO:0003746	molecular_function	translation elongation factor activity
GO:0005516	molecular_function	calmodulin binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12625.4.S1_x_at--644--155	4	Chr03:4098281..4098305 (25 bp)	AGCTTCACCTCCCAGGTGATCATCA	LOC_Os03g08060
Os.12625.4.S1_x_at--219--1053	4	Chr03:4098284..4098308 (25 bp)	TTCACCTCCCAGGTGATCATCATGA	LOC_Os03g08060
Os.12625.4.S1_x_at--470--175	4	Chr03:4098287..4098311 (25 bp)	ACCTCCCAGGTGATCATCATGAACC	LOC_Os03g08060
Os.12625.4.S1_x_at--255--105	4	Chr03:4098294..4098318 (25 bp)	AGGTGATCATCATGAACCACCCTGG	LOC_Os03g08060
Os.12625.4.S1_x_at--764--959	1	NONE	TCATGAACCACCCTGGGCCAGATCG	NONE
Os.12625.4.S1_x_at--710--389	3	Chr03:4098389..4098413 (25 bp)	CTGGTGACCAAGATCGACAGACGAT	LOC_Os03g08060
Os.12625.4.S1_x_at--1144--71	3	Chr03:4098476..4098500 (25 bp)	ATGATTCCCACCAAGCCCATGGTTG	LOC_Os03g08060
Os.12625.4.S1_x_at--892--655	3	Chr03:4098478..4098502 (25 bp)	GATTCCCACCAAGCCCATGGTTGTG	LOC_Os03g08060
Os.12625.4.S1_x_at--76--847	4	Chr03:4098571..4098595 (25 bp)	TGGCGTCATCAAGAACGTGGAGAAG	LOC_Os03g08060
Os.12625.4.S1_x_at--886--889	1	NONE	TGAGATATCTTAGCTCTTTTAGTAC	NONE
Os.12625.4.S1_x_at--881--955	1	Chr03:4076394..4076415 (22 bp)	TCTTAGCTCTTTTAGTACTCGTTAA	NONE

Target Sequence

AGCTTCACCTCCCAGGTGATCATCATGAACCACCCTGGGCCAGATCGGCAANGGCTACGCCCCAGTGCTGGACTGCCACA
CCTCNCACATTGCCGTCAAGTTTGCTGAGCTGGTGACCAAGATCGACAGACGATCNGGNAAGGAGCTGGAGAAGGAGCCC
AAGTTCCTCAAGAACGGTGATGCTGGTATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTGGAGACCTTCTCTGAGTA
CCCTCCTCTTGGTCGTTTTGCNGTGCGTGACATGAGGCAAACGGTGGCTGTTGGCGTCATCAAGAACGTGGAGAAGAAGG
ACCCAACCGGTGCCAAGGTGACCAAGGCTGCCNNCAAGAAGAAATGAGCNTCGTTNAAGTGGTGNTTATNCATNNCTGCA
TTTGAGATATCTTAGCTCTTTTAGTACTCGTTAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis