Browse Element(s) Details


Os.12641.1.S1_s_at

Description gb:C22384
DB_XREF= gi:2317330
DB_XREF=C22384
CLONE=C12916_3Z
TID=Os.12641.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12641 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_195257.1 (A.thaliana) calmodulin-domain protein kinase CDPK isoform 5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4609011/11Calcium-dependent protein kinase, isoform 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46050NANA2+28054835..28058125retrotransposon protein, putative, unclassified
LOC_Os02g46060OsAffx.19542.3.S1_x_at3/112+28059010..28063746retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g46070NANA2+28067088..28069433transposon protein, putative, Mutator sub-class
LOC_Os02g46080Os.49254.1.S1_at10/112+28072953..28075904protein phosphatase 2C family protein, putative, expressed
LOC_Os02g46090Os.12641.1.S1_s_at11/112+28080860..28086282Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os02g46090OsAffx.12515.1.S1_at8/112+28080860..28086282Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os02g46100OsAffx.24747.1.S1_at11/112+28091110..28092152Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46110OsAffx.4509.1.S1_s_at8/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.24748.1.S1_at3/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.4509.1.S1_x_at1/112+28099353..28101044hypothetical protein
LOC_Os02g46120Os.52348.1.S1_at10/112+28102765..28107558regulatory protein, putative, expressed
LOC_Os02g46130Os.12716.1.S1_a_at11/112+28107762..28113117Aspartyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0005777cellular_componentperoxisome
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12641.1.S1_s_at--499--231Chr02:28084560..28084584 (25 bp)
ATATTACGGTGGATGAGCTTCAGCA
LOC_Os02g46090
Os.12641.1.S1_s_at--524--591Chr02:28084604..28084628 (25 bp)
ATGCCAGATGCTTTTCTCGATGACG
LOC_Os02g46090
Os.12641.1.S1_s_at--1012--4111Chr02:28085944..28085968 (25 bp)
CGCACCTGGTGCACTATGAAGTCTG
LOC_Os02g46090
Os.12641.1.S1_s_at--1031--5451Chr02:28085968..28085992 (25 bp)
GAACGTCCACAGTGCAGCTTTGAAA
LOC_Os02g46090
Os.12641.1.S1_s_at--276--10511Chr02:28085997..28086021 (25 bp)
TTCAATCTCCATGCTCTATACGGAC
LOC_Os02g46090
Os.12641.1.S1_s_at--993--9531Chr02:28086011..28086035 (25 bp)
TCTATACGGACACTGCCTGCAATTT
LOC_Os02g46090
Os.12641.1.S1_s_at--550--3811Chr02:28086023..28086047 (25 bp)
CTGCCTGCAATTTTTGTACGCTGTC
LOC_Os02g46090
Os.12641.1.S1_s_at--782--2131Chr02:28086115..28086139 (25 bp)
ACAGTCGGTATGTGTTTCAGGTTCA
LOC_Os02g46090
Os.12641.1.S1_s_at--114--6751Chr02:28086153..28086177 (25 bp)
GTTCATCTAATTCAACTGCTCCTGT
LOC_Os02g46090
Os.12641.1.S1_s_at--1135--7611Chr02:28086201..28086225 (25 bp)
GGGAAAGTGCCCATGCCATGCGCAA
LOC_Os02g46090
Os.12641.1.S1_s_at--533--4431Chr02:28086215..28086239 (25 bp)
GCCATGCGCAAACTAGGCTACAATG
LOC_Os02g46090
Target Sequence 
ATATTACGGTGGATGAGCTTCAGCAAGCTTGCAAAGAGCATAACATGCCAGATGCTTTTCTCGATGACGTCATTAAAGAA
GCTGATCAGGATAATGATGGTCGCATTGACTACGGGGAATTCGTTGCCATGATGACAAAGGGCAATATGGGTGTTGGGAG
GAGAACAATGAGAAACAGCTTGAATATAAGCATGAGATGAGACGCACCTGGTGCACTATGAAGTCTGAACGTCCACAGTG
CAGCTTTGAAACTTCTTCAATCTCCATGCTCTATACGGACACTGCCTGCAATTTTTGTACGCTGTCAGTTGTANCCTTGT
AGGTGTGGGTATGTGTTTCAGGTTCAGGGGATTCTAATTGTTCATCTAATTCAACAGTCGGTATGTGTTTCAGGTTCAGG
GAATTCTAATTGTTCATCTAATTCAACTGCTCCTGTTNTTNCTACGAAATGCACGGGGTGGGAAAGTGCCCATGCCATGC
GCAAACTAGGCTACAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12641.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis