Browse Element(s) Details


OsAffx.24747.1.S1_at

Description tigr:9630.m04476
TID=OsAffx.24747.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4610011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46070NANA2+28067088..28069433transposon protein, putative, Mutator sub-class
LOC_Os02g46080Os.49254.1.S1_at10/112+28072953..28075904protein phosphatase 2C family protein, putative, expressed
LOC_Os02g46090Os.12641.1.S1_s_at11/112+28080860..28086282Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os02g46090OsAffx.12515.1.S1_at8/112+28080860..28086282Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os02g46100OsAffx.24747.1.S1_at11/112+28091110..28092152Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46110OsAffx.4509.1.S1_s_at8/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.24748.1.S1_at3/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.4509.1.S1_x_at1/112+28099353..28101044hypothetical protein
LOC_Os02g46120Os.52348.1.S1_at10/112+28102765..28107558regulatory protein, putative, expressed
LOC_Os02g46130Os.12716.1.S1_a_at11/112+28107762..28113117Aspartyl-tRNA synthetase, putative, expressed
LOC_Os02g46140Os.47398.2.A1_at11/112+28116496..28118283expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24747.1.S1_at--1028--9111Chr02:28091982..28092006 (25 bp)
TCGGTGGAGGACTCACTCAACTCGG
LOC_Os02g46100
OsAffx.24747.1.S1_at--1046--7691Chr02:28091980..28092004 (25 bp)
GGTGGAGGACTCACTCAACTCGGAC
LOC_Os02g46100
OsAffx.24747.1.S1_at--840--8551Chr02:28091978..28092002 (25 bp)
TGGAGGACTCACTCAACTCGGACCT
LOC_Os02g46100
OsAffx.24747.1.S1_at--933--8011Chr02:28091977..28092001 (25 bp)
GGAGGACTCACTCAACTCGGACCTC
LOC_Os02g46100
OsAffx.24747.1.S1_at--27--7811Chr02:28091777..28091801 (25 bp)
GGTCGCTCCCGACCGTGACGTACGT
LOC_Os02g46100
OsAffx.24747.1.S1_at--677--4071Chr02:28091768..28091792 (25 bp)
CGACCGTGACGTACGTCTCCGACGG
LOC_Os02g46100
OsAffx.24747.1.S1_at--556--491Chr02:28091517..28091541 (25 bp)
ATCGGCGCGCTGCTCTTGAATTACT
LOC_Os02g46100
OsAffx.24747.1.S1_at--447--4571Chr02:28091513..28091537 (25 bp)
GCGCGCTGCTCTTGAATTACTGGAA
LOC_Os02g46100
OsAffx.24747.1.S1_at--880--4571Chr02:28091511..28091535 (25 bp)
GCGCTGCTCTTGAATTACTGGAAGG
LOC_Os02g46100
OsAffx.24747.1.S1_at--740--9051Chr02:28091507..28091531 (25 bp)
TGCTCTTGAATTACTGGAAGGCGCC
LOC_Os02g46100
OsAffx.24747.1.S1_at--619--9551Chr02:28091504..28091528 (25 bp)
TCTTGAATTACTGGAAGGCGCCGGC
LOC_Os02g46100
Target Sequence 
TCGGTGGAGGACTCACTCAACTCGGACCTCGTCGTCATCCTCGCCGGGCTGCTCTGCGCGCTCATCTGCGTCCTCGGCCT
CGGCCTCGTCGCCCGGTGCGCGTGCACGCGCCGCTGGGCGCGGGCCGCCGGCGGCGGGACAGCGGCTGGCGGCGGCGGCG
GTGGCGCCGCCGCGGCGAACAAGGGCGTCAAGAAGGAGGTGCTGCGGTCGCTCCCGACCGTGACGTACGTCTCCGACGGC
GGCGGCGGCGAGGCGGAGGAGTGCGCCATCTGCCTCGTGGAGTTCGAGGACGGGCAGGCCGTGCGCGTGCTGCCGCAGTG
CGACCACCGCTTCCACGCCGCCTGCATCGACACGTGGCTGCGCGCGCACTCGTCGTGCCCGTCGTGCCGCCGCGTGCTCG
TCGCCGCCGAGATGCCCCCCGGCGAGCGGTGCGGCCGCTGCGGCGCGCGCTCCGGCGGCCGCGGCATCGGCGCGCTGCTC
TTGAATTACTGGAAGGCGCCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis