Browse Element(s) Details


OsAffx.12515.1.S1_at

Description tigr:9630.m04475
TID=OsAffx.12515.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g460908/11Calcium-dependent protein kinase, isoform 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46050NANA2+28054835..28058125retrotransposon protein, putative, unclassified
LOC_Os02g46060OsAffx.19542.3.S1_x_at3/112+28059010..28063746retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g46070NANA2+28067088..28069433transposon protein, putative, Mutator sub-class
LOC_Os02g46080Os.49254.1.S1_at10/112+28072953..28075904protein phosphatase 2C family protein, putative, expressed
LOC_Os02g46090Os.12641.1.S1_s_at11/112+28080860..28086282Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os02g46090OsAffx.12515.1.S1_at8/112+28080860..28086282Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os02g46100OsAffx.24747.1.S1_at11/112+28091110..28092152Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46110OsAffx.4509.1.S1_s_at8/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.24748.1.S1_at3/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.4509.1.S1_x_at1/112+28099353..28101044hypothetical protein
LOC_Os02g46120Os.52348.1.S1_at10/112+28102765..28107558regulatory protein, putative, expressed
LOC_Os02g46130Os.12716.1.S1_a_at11/112+28107762..28113117Aspartyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0005777cellular_componentperoxisome
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12515.1.S1_at--631--8171Chr02:28084510..28084534 (25 bp)
GGAACATCTAGTGGCAGCCTTTTCT
LOC_Os02g46090
OsAffx.12515.1.S1_at--332--5491Chr02:28084511..28084535 (25 bp)
GAACATCTAGTGGCAGCCTTTTCTT
LOC_Os02g46090
OsAffx.12515.1.S1_at--111--2511Chr02:28084512..28084536 (25 bp)
AACATCTAGTGGCAGCCTTTTCTTA
LOC_Os02g46090
OsAffx.12515.1.S1_at--462--2091Chr02:28084513..28084537 (25 bp)
ACATCTAGTGGCAGCCTTTTCTTAT
LOC_Os02g46090
OsAffx.12515.1.S1_at--291--3551Chr02:28084514..28084538 (25 bp)
CATCTAGTGGCAGCCTTTTCTTATT
LOC_Os02g46090
OsAffx.12515.1.S1_at--319--451Chr02:28084515..28084539 (25 bp)
ATCTAGTGGCAGCCTTTTCTTATTT
LOC_Os02g46090
OsAffx.12515.1.S1_at--169--9551Chr02:28084516..28084540 (25 bp)
TCTAGTGGCAGCCTTTTCTTATTTC
LOC_Os02g46090
OsAffx.12515.1.S1_at--447--3691Chr02:28084517..28084541 (25 bp)
CTAGTGGCAGCCTTTTCTTATTTCG
LOC_Os02g46090
Target Sequence 
GGAACATCTAGTGGCAGCCTTTTCTTATTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12515.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis