Browse Element(s) Details


Os.12654.1.S1_at

Description gb:AK070226.1
DB_XREF= gi:32980250
TID=Os.12654.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042D11, full insert sequence.
FL= gb:AK070226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3993011/11Serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39900NANA9+22871482..22877637retrotransposon protein, putative, unclassified
LOC_Os09g39910Os.38157.1.S1_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.38157.1.S1_s_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.15747.1.A1_at10/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39920Os.55181.1.S1_at11/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39920OsAffx.19468.2.S1_at1/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39930Os.12654.1.S1_at11/119+22902539..22904349Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os09g39940Os.21629.1.S1_at11/119+22907376..22908312Plastocyanin-like domain containing protein, expressed
LOC_Os09g39950Os.50339.1.S1_at11/119+22908515..22909225Pollen-specific protein C13 precursor, putative, expressed
LOC_Os09g39960Os.52791.1.S1_at11/119+22911086..22916239Dynamin-related protein 1C, putative, expressed
LOC_Os09g39970Os.53580.1.S1_at11/119+22916723..22925111Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os09g39980Os.18292.1.S1_at4/119+22924985..22928249ubiquitin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005792cellular_componentmicrosome
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12654.1.S1_at--945--4211Chr09:22903900..22903924 (25 bp)
CCGCCCCGCGCTTCAAGGACAAGAA
LOC_Os09g39930
Os.12654.1.S1_at--837--4191Chr09:22904157..22904181 (25 bp)
CCCGCCGCATAATCAATCATATCGA
LOC_Os09g39930
Os.12654.1.S1_at--295--371Chr09:22904168..22904192 (25 bp)
ATCAATCATATCGATCGTCTCTCTC
LOC_Os09g39930
Os.12654.1.S1_at--366--3191Chr09:22904170..22904194 (25 bp)
CAATCATATCGATCGTCTCTCTCTC
LOC_Os09g39930
Os.12654.1.S1_at--856--9871Chr09:22904205..22904229 (25 bp)
TACATGTACTACCACTATCTATATA
LOC_Os09g39930
Os.12654.1.S1_at--711--7011Chr09:22904210..22904234 (25 bp)
GTACTACCACTATCTATATAATATG
LOC_Os09g39930
Os.12654.1.S1_at--727--9751Chr09:22904228..22904252 (25 bp)
TAATATGTCATATACTTCTACTTCA
LOC_Os09g39930
Os.12654.1.S1_at--172--1571Chr09:22904267..22904291 (25 bp)
AGCTACAGTACCTACCTACATACAT
LOC_Os09g39930
Os.12654.1.S1_at--692--1171Chr09:22904273..22904297 (25 bp)
AGTACCTACCTACATACATGCTAGC
LOC_Os09g39930
Os.12654.1.S1_at--148--1751Chr09:22904276..22904300 (25 bp)
ACCTACCTACATACATGCTAGCTTA
LOC_Os09g39930
Os.12654.1.S1_at--308--3531Chr09:22904289..22904313 (25 bp)
CATGCTAGCTTAATTTACGCACGTA
LOC_Os09g39930
Target Sequence 
CCGCCCCGCGCTTCAAGGACAAGAAGCTCTTCGCCGACATGGCCGACCCCTTGCTCCGCGGCGCCTACCCCACCAAGGGC
CTCTACCAGGCCCTCGCCATCGCCGCCATGTGCCTCCAGGAGGACGCCACCATGCGCCCTGCCATCAGCGACGTCGTCAC
CGCGCTCGAGTACCTCACCGTCGCCGGCGCCTCCTCCGAGCCTGCCCNTCGTCCCCAGAAGCTGCAGCCGCCGGAGGACG
ACGACGATGACCAACGCCCCGCCGCATAATCAATCATATCGATCGTCTCTCTCTCTCTCTCTCTATACATGTACTACCAC
TATCTATATAATATGTCATATACTTCTACTTCANNNANANANNANANAGCTACAGTACCTACCTACATACATGCTAGCTT
AATTTACGCACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis