Browse Element(s) Details


Os.38157.1.S1_at

Description gb:AK069041.1
DB_XREF= gi:32979065
TID=Os.38157.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38157 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004J15, full insert sequence.
FL= gb:AK069041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3991011/11ATP-binding cassette sub-family F member 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39870Os.6306.1.S1_at11/119+22854836..228586012-phosphoglycerate kinase, putative, expressed
LOC_Os09g39870Os.6306.1.S2_at11/119+22854836..228586012-phosphoglycerate kinase, putative, expressed
LOC_Os09g39880OsAffx.9045.1.S1_x_at4/119+22862064..22866509hypothetical protein
LOC_Os09g39880OsAffx.9045.1.S1_at3/119+22862064..22866509hypothetical protein
LOC_Os09g39890Os.31312.1.S1_at8/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39890Os.31312.5.S1_x_at5/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39890Os.31312.2.S1_x_at4/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39900NANA9+22871482..22877637retrotransposon protein, putative, unclassified
LOC_Os09g39910Os.38157.1.S1_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.38157.1.S1_s_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.15747.1.A1_at10/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39920Os.55181.1.S1_at11/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39920OsAffx.19468.2.S1_at1/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39930Os.12654.1.S1_at11/119+22902539..22904349Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os09g39940Os.21629.1.S1_at11/119+22907376..22908312Plastocyanin-like domain containing protein, expressed
LOC_Os09g39950Os.50339.1.S1_at11/119+22908515..22909225Pollen-specific protein C13 precursor, putative, expressed
LOC_Os09g39960Os.52791.1.S1_at11/119+22911086..22916239Dynamin-related protein 1C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38157.1.S1_at--971--4871Chr09:22883042..22883163 (25 bp)
GCTATAGCCCATATGATGTACCGTC
LOC_Os09g39910
Os.38157.1.S1_at--152--10171Chr09:22883040..22883161 (25 bp)
TATAGCCCATATGATGTACCGTCCT
LOC_Os09g39910
Os.38157.1.S1_at--38--291Chr09:22883039..22883160 (25 bp)
ATAGCCCATATGATGTACCGTCCTC
LOC_Os09g39910
Os.38157.1.S1_at--711--9951Chr09:22883038..22883159 (25 bp)
TAGCCCATATGATGTACCGTCCTCT
LOC_Os09g39910
Os.38157.1.S1_at--38--672Chr09:22882652..22882676 (25 bp)
ATGAGATTGGATTTTAAACTCTTGA
LOC_Os09g39910
Os.38157.1.S1_at--245--1251Chr09:22882649..22882673 (25 bp)
AGATTGGATTTTAAACTCTTGAGGG
LOC_Os09g39910
Os.38157.1.S1_at--1037--7651Chr09:22882626..22882650 (25 bp)
GGGATGTCTCATCGTTGCTTGTATG
LOC_Os09g39910
Os.38157.1.S1_at--1110--7991Chr09:22882625..22882649 (25 bp)
GGATGTCTCATCGTTGCTTGTATGT
LOC_Os09g39910
Os.38157.1.S1_at--752--6271Chr09:22882624..22882648 (25 bp)
GATGTCTCATCGTTGCTTGTATGTT
LOC_Os09g39910
Os.38157.1.S1_at--557--3511Chr09:22882579..22882603 (25 bp)
CATGTGATATATCTTATTATAAGCA
LOC_Os09g39910
Os.38157.1.S1_at--1160--411Chr09:22882569..22882593 (25 bp)
ATCTTATTATAAGCATTCAACTTAA
LOC_Os09g39910
Target Sequence 
GCTATAGCCCATATGATGTACCGTCCTCTTCTTGGGGTCTCTGGAGAATGAGGAAACAGCAAGATCCAGCCAGCATAGCA
TGTATGTATAGTGTAATTAGCTGGTTTGTTGGCGGTGCACATGCATAAGATATACTTCCTCCGTTTCATATTATAATACT
ATCTATTATTGCCCACATTCATATATATGTCTAGATTCATTAGCATCTATATGAATGTGGGCAATNGATAGAAAGTCTTA
TAATATGAAACGGAGGGAGTANNTATCTTGGTTTGCACTTGCATGATCACCTGCTGTAGTTATTATTATCAGTGACCAAG
TTCCCCTAGCTAGCAGTAGCACTCCATGAANAGATATCTACATGAAACTGTACCACCCCCACGATATTATATATGAGATT
GGATTTTAAACTCTTGAGGGGATGTCTCATCGTTGCTTGTATGTTNAATTGAGAAGATGTATTANCATGTGATATATCTT
ATTATAAGCATTCAACTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis