Browse Element(s) Details


Os.55181.1.S1_at

Description gb:AK107635.1
DB_XREF= gi:32992844
TID=Os.55181.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55181 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-E08, full insert sequence.
FL= gb:AK107635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3992011/11beta-1,4-mannan synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39900NANA9+22871482..22877637retrotransposon protein, putative, unclassified
LOC_Os09g39910Os.38157.1.S1_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.38157.1.S1_s_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.15747.1.A1_at10/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39920Os.55181.1.S1_at11/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39920OsAffx.19468.2.S1_at1/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39930Os.12654.1.S1_at11/119+22902539..22904349Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os09g39940Os.21629.1.S1_at11/119+22907376..22908312Plastocyanin-like domain containing protein, expressed
LOC_Os09g39950Os.50339.1.S1_at11/119+22908515..22909225Pollen-specific protein C13 precursor, putative, expressed
LOC_Os09g39960Os.52791.1.S1_at11/119+22911086..22916239Dynamin-related protein 1C, putative, expressed
LOC_Os09g39970Os.53580.1.S1_at11/119+22916723..22925111Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os09g39980Os.18292.1.S1_at4/119+22924985..22928249ubiquitin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55181.1.S1_at--121--3751Chr09:22901721..22901745 (25 bp)
CTCTTCGAGAACGTCATGTCCATGC
LOC_Os09g39920
Os.55181.1.S1_at--759--7791Chr09:22901801..22901825 (25 bp)
GGTCGTCACCGACAAGCGAGGCAAC
LOC_Os09g39920
Os.55181.1.S1_at--338--3371Chr09:22901894..22901918 (25 bp)
CAGCCGCACAAGCTTCTTCAATAAT
LOC_Os09g39920
Os.55181.1.S1_at--65--3091Chr09:22901913..22901937 (25 bp)
AATAATGACGTCCATGTCGCCGAGA
LOC_Os09g39920
Os.55181.1.S1_at--769--4591Chr09:22901992..22902016 (25 bp)
GCGACAGCTTCTACATCTACCTGCT
LOC_Os09g39920
Os.55181.1.S1_at--764--4911Chr09:22902046..22902070 (25 bp)
GCTTCGGCTACGTCGGGACCTAGCA
LOC_Os09g39920
Os.55181.1.S1_at--630--7171Chr09:22902057..22902081 (25 bp)
GTCGGGACCTAGCAGCTACTACTAC
LOC_Os09g39920
Os.55181.1.S1_at--398--4851Chr09:22902071..22902095 (25 bp)
GCTACTACTACTCTTACTCTACATG
LOC_Os09g39920
Os.55181.1.S1_at--358--9911Chr09:22902079..22902103 (25 bp)
TACTCTTACTCTACATGCATCCATG
LOC_Os09g39920
Os.55181.1.S1_at--117--4991Chr09:22902095..22902119 (25 bp)
GCATCCATGTATAATTCCATCCATT
LOC_Os09g39920
Os.55181.1.S1_at--336--91Chr09:22902108..22902132 (25 bp)
ATTCCATCCATTATATTCCTGCATA
LOC_Os09g39920
Target Sequence 
CTCTTCGAGAACGTCATGTCCATGCACCGGACCAAGGCCACGCTCATCGGCCTGCTCGAGGCCACCCGCGCCAACGAGTG
GGTCGTCACCGACAAGCGAGGCAACGCCAACCCCAAGCACCAGCAGCCAGCTAATACCACCACCAGGCCTGGGAGGAAGA
CCACCACCAGCTCCAGCCGCACAAGCTTCTTCAATAATGACGTCCATGTCGCCGAGATCCTCCTGGGGGCCTGCCTGCTC
TACTGCGCCCTCTACGACATCGCCTACGGCCGCGACAGCTTCTACATCTACCTGCTCCTCCAGTCGGCCGCCGCCTTCAT
CGTCGGCTTCGGCTACGTCGGGACCTAGCAGCTACTACTACTCTTACTCTACATGCATCCATGTATAATTCCATCCATTA
TATTCCTGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis