Browse Element(s) Details


Os.6306.1.S1_at

Description gb:AK109639.1
DB_XREF= gi:32994848
TID=Os.6306.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E07, full insert sequence.
FL= gb:AK072621.1 gb:AK109639.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3987011/112-phosphoglycerate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39820OsAffx.21171.3.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.20729.1.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.21171.5.S1_x_at1/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22927.2.S1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22894.1.S1_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22711.4.A1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22927.1.S1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39840NANA9+22838562..22839161retrotransposon protein, putative, unclassified
LOC_Os09g39850OsAffx.18062.1.S1_x_at11/119+22846805..22847455ethylene response factor ERF1, putative
LOC_Os09g39860Os.52353.1.S2_at11/119+22851868..22853942expressed protein
LOC_Os09g39860Os.52353.1.S1_at11/119+22851868..22853942expressed protein
LOC_Os09g39870Os.6306.1.S1_at11/119+22854836..228586012-phosphoglycerate kinase, putative, expressed
LOC_Os09g39870Os.6306.1.S2_at11/119+22854836..228586012-phosphoglycerate kinase, putative, expressed
LOC_Os09g39880OsAffx.9045.1.S1_x_at4/119+22862064..22866509hypothetical protein
LOC_Os09g39880OsAffx.9045.1.S1_at3/119+22862064..22866509hypothetical protein
LOC_Os09g39890Os.31312.1.S1_at8/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39890Os.31312.5.S1_x_at5/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39890Os.31312.2.S1_x_at4/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39900NANA9+22871482..22877637retrotransposon protein, putative, unclassified
LOC_Os09g39910Os.38157.1.S1_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.38157.1.S1_s_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.15747.1.A1_at10/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6306.1.S1_at--531--4511Chr09:22856647..22856671 (25 bp)
GCCGACAAGTACCTAGTTCCCAAGG
LOC_Os09g39870
Os.6306.1.S1_at--758--491Chr09:22856690..22856714 (25 bp)
ATCGGAGTGTGGCTTCTATCCATGC
LOC_Os09g39870
Os.6306.1.S1_at--616--7151Chr09:22856719..22856743 (25 bp)
GTCTTTAGCTGCCTCCGTAGGAGAG
LOC_Os09g39870
Os.6306.1.S1_at--555--7751Chr09:22856749..22856773 (25 bp)
GGTGATCAGTTATATGACCCTGCTA
LOC_Os09g39870
Os.6306.1.S1_at--1090--2971Chr09:22856813..22856837 (25 bp)
AATGTGTGGCCAACTCCATGAGTTC
LOC_Os09g39870
Os.6306.1.S1_at--463--2751Chr09:22856877..22856901 (25 bp)
AAGAAAGCTCATGGCCATTGTCAAT
LOC_Os09g39870
Os.6306.1.S1_at--1117--2931Chr09:22856920..22856944 (25 bp)
AAGGCTTGGCCGGTTGAGTCCAGCA
LOC_Os09g39870
Os.6306.1.S1_at--297--4611Chr09:22856993..22857017 (25 bp)
GCGATCCAATATACGGGCCTCTAAA
LOC_Os09g39870
Os.6306.1.S1_at--1018--1071Chr09:22857025..22857049 (25 bp)
AGGGCAGAGTCAGTCAATCTCCAGT
LOC_Os09g39870
Os.6306.1.S1_at--284--3051Chr09:22857040..22857064 (25 bp)
AATCTCCAGTTTGGCGCTTTCGGAA
LOC_Os09g39870
Os.6306.1.S1_at--671--10271Chr09:22857057..22857081 (25 bp)
TTTCGGAATAAGTGCCTGGCCTACT
LOC_Os09g39870
Target Sequence 
GCCGACAAGTACCTAGTTCCCAAGGTGAACAACACTAATGTTGATCGGAGTGTGGCTTCTATCCATGCCACTGTCTTTAG
CTGCCTCCGTAGGAGAGCTGCTGGTGATCAGTTATATGACCCTGCTACAAACACAGTGGCAGTTGTAAACGAGGAATACA
AAAACCAATGTGTGGCCAACTCCATGAGTTCCAAGGGGATGTTCAAATTGATTCAAAGGTTAGGATCCTCAAGAAAGCTC
ATGGCCATTGTCAATGTGGATGGATCTGTTTCAAAGGCTTGGCCGGTTGAGTCCAGCAGCGGGGATGGAAAAGGCGGTTC
GGAAAATGGCAGTAAGAAATATGTAGGCGATCCAATATACGGGCCTCTAAATATTGGAAGGGCAGAGTCAGTCAATCTCC
AGTTTGGCGCTTTCGGAATAAGTGCCTGGCCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis