Browse Element(s) Details

Os.52353.1.S2_at

Description

gb:AK106416.1
DB_XREF= gi:32991625
TID=Os.52353.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-A06, full insert sequence.
FL= gb:AK066582.1 gb:AK106416.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g39860	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g39820	OsAffx.21171.3.S1_x_at	2/11	9	+	22828444..22834333	retrotransposon protein, putative, unclassified
LOC_Os09g39820	OsAffx.20729.1.S1_x_at	2/11	9	+	22828444..22834333	retrotransposon protein, putative, unclassified
LOC_Os09g39820	OsAffx.21171.5.S1_x_at	1/11	9	+	22828444..22834333	retrotransposon protein, putative, unclassified
LOC_Os09g39830	OsAffx.22927.2.S1_x_at	1/11	9	+	22834728..22838121	retrotransposon protein, putative, unclassified
LOC_Os09g39830	OsAffx.22894.1.S1_at	1/11	9	+	22834728..22838121	retrotransposon protein, putative, unclassified
LOC_Os09g39830	OsAffx.22711.4.A1_x_at	1/11	9	+	22834728..22838121	retrotransposon protein, putative, unclassified
LOC_Os09g39830	OsAffx.22927.1.S1_x_at	1/11	9	+	22834728..22838121	retrotransposon protein, putative, unclassified
LOC_Os09g39840	NA	NA	9	+	22838562..22839161	retrotransposon protein, putative, unclassified
LOC_Os09g39850	OsAffx.18062.1.S1_x_at	11/11	9	+	22846805..22847455	ethylene response factor ERF1, putative
LOC_Os09g39860	Os.52353.1.S2_at	11/11	9	+	22851868..22853942	expressed protein
LOC_Os09g39860	Os.52353.1.S1_at	11/11	9	+	22851868..22853942	expressed protein
LOC_Os09g39870	Os.6306.1.S1_at	11/11	9	+	22854836..22858601	2-phosphoglycerate kinase, putative, expressed
LOC_Os09g39870	Os.6306.1.S2_at	11/11	9	+	22854836..22858601	2-phosphoglycerate kinase, putative, expressed
LOC_Os09g39880	OsAffx.9045.1.S1_x_at	4/11	9	+	22862064..22866509	hypothetical protein
LOC_Os09g39880	OsAffx.9045.1.S1_at	3/11	9	+	22862064..22866509	hypothetical protein
LOC_Os09g39890	Os.31312.1.S1_at	8/11	9	+	22867656..22871158	retrotransposon protein, putative, unclassified
LOC_Os09g39890	Os.31312.5.S1_x_at	5/11	9	+	22867656..22871158	retrotransposon protein, putative, unclassified
LOC_Os09g39890	Os.31312.2.S1_x_at	4/11	9	+	22867656..22871158	retrotransposon protein, putative, unclassified
LOC_Os09g39900	NA	NA	9	+	22871482..22877637	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0007169	biological_process	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.52353.1.S2_at--863--709	1	Chr09:22852391..22852415 (25 bp)	GTCACTAGCTACTTCTTCTGTACAA	LOC_Os09g39860
Os.52353.1.S2_at--49--1001	1	Chr09:22852337..22852361 (25 bp)	TAGCTCCTCTTGCAATGGTTGGTTC	LOC_Os09g39860
Os.52353.1.S2_at--105--793	1	Chr09:22852321..22852345 (25 bp)	GGTTGGTTCCATATCATATCTGACA	LOC_Os09g39860
Os.52353.1.S2_at--215--565	1	Chr09:22852300..22852324 (25 bp)	GACAGTGACCATTTCTTAAGTTTGA	LOC_Os09g39860
Os.52353.1.S2_at--964--119	1	Chr09:22852282..22852306 (25 bp)	AGTTTGACTTAAGCCATCTGTTCCT	LOC_Os09g39860
Os.52353.1.S2_at--355--59	1	Chr09:22852222..22852246 (25 bp)	ATCCAACCTGGTCATGCAAGTTTGT	LOC_Os09g39860
Os.52353.1.S2_at--407--1013	1	Chr09:22852157..22852181 (25 bp)	TATGACTAGTAGCTCCGCTGGATCA	LOC_Os09g39860
Os.52353.1.S2_at--711--807	1	Chr09:22852132..22852156 (25 bp)	GGAGCATCGATCTATTTTGACCTTT	LOC_Os09g39860
Os.52353.1.S2_at--149--17	1	Chr09:22852119..22852143 (25 bp)	ATTTTGACCTTTTTGCACCTTATGC	LOC_Os09g39860
Os.52353.1.S2_at--419--695	1	Chr09:22852085..22852109 (25 bp)	GTAGCTACTATTACTCTGTCTGTGG	LOC_Os09g39860
Os.52353.1.S2_at--104--211	1	Chr09:22851927..22851951 (25 bp)	ACATGCTCCCTCTGATTATTTATTT	LOC_Os09g39860

Target Sequence

GTCACTAGCTACTTCTTCTGTACAAATATGCATTTGACCAGCTACATGTATACCTAGCTCCTCTTGCAATGGTTGGTTCC
ATATCATATCTGACAGTGACCATTTCTTAAGTTTGACTTAAGCCATCTGTTCCTTGTTTTAGCCCGGCCGCTACAACAAT
CAATCATACATCCAACCTGGTCATGCAAGTTTGTTTGTTAATTTGTCATGAAAAACAACAAATGAGCATGGAATTATGAC
TAGTAGCTCCGCTGGATCAGGAGCATCGATCTATTTTGACCTTTTTGCACCTTATGCACCCAGCTCGTAGCTACTATTAC
TCTGTCTGTGGTAGTAGTTCGGTCAATTCAAAAGTCGCATCTATAGAATGCATCTATCGTTATACTTAATTATAATTTAA
AATATGATCGATGTGTCTACGTACACTGTTATCAGGTCAACGTGAGGAAGGAATTGAAGAAGCTACATGCTCCCTCTGAT
TATTTATTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis