Browse Element(s) Details


Os.12659.1.S1_at

Description gb:AU197566
DB_XREF= gi:14713576
DB_XREF=AU197566
CLONE=E1459
TID=Os.12659.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative DNA cytosine methyltransferase MET2a (OJ1626B05.3), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1257011/11C-5 cytosine-specific DNA methylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12530Os.34767.1.S1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.34767.2.S1_s_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.15382.1.A1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12540OsAffx.25069.1.S1_at11/113+6620531..6621229hypothetical protein
LOC_Os03g12550Os.17828.1.S1_s_at11/113+6626405..6632923expressed protein
LOC_Os03g12560Os.9413.1.S1_at11/113+6633739..6635783expressed protein
LOC_Os03g12570Os.12659.1.S1_at11/113+6637038..6647835C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os03g12580OsAffx.22279.1.S1_at11/113+6653353..6654586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12590Os.10603.1.S1_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12590Os.43914.1.S1_x_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12600OsAffx.32166.1218.S1_x_at5/113+6666205..6674361retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006342biological_processchromatin silencing
GO:0006468biological_processprotein amino acid phosphorylation
GO:0045814biological_processnegative regulation of gene expression, epigenetic
GO:0003677molecular_functionDNA binding
GO:0003886molecular_functionDNA (cytosine-5-)-methyltransferase activity
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12659.1.S1_at--181--5971Chr03:6647152..6647176 (25 bp)
GAGAACAAGTTCGACCGGCTGGAGA
LOC_Os03g12570
Os.12659.1.S1_at--521--8991Chr03:6647342..6647362 (21 bp)
TGAAGCAGATTGTCCGTGCGCTGGA
LOC_Os03g12570
Os.12659.1.S1_at--344--2671Chr03:6647400..6647424 (25 bp)
AAGCCCGGGCAGAGCATGATGTTCA
LOC_Os03g12570
Os.12659.1.S1_at--230--9951Chr03:6647454..6647478 (25 bp)
TACGCTTCCGACATCAACAGGTTGA
LOC_Os03g12570
Os.12659.1.S1_at--724--2891Chr03:6647481..6647505 (25 bp)
AAGGTGGCCTTCGAGAGCAGCATCG
LOC_Os03g12570
Os.12659.1.S1_at--380--2491Chr03:6647566..6647590 (25 bp)
AACAGCATCGCTAGCCGTATGATCG
LOC_Os03g12570
Os.12659.1.S1_at--776--6211Chr03:6647591..6647615 (25 bp)
GAGGCGTCGAGCTAGACTTGACTAT
LOC_Os03g12570
Os.12659.1.S1_at--262--2071Chr03:6647606..6647630 (25 bp)
ACTTGACTATTTCTTCGGTGCGTGA
LOC_Os03g12570
Os.12659.1.S1_at--920--31Chr03:6647709..6647733 (25 bp)
ATTGGGATACTGTCGTGCATATTGC
LOC_Os03g12570
Os.12659.1.S1_at--650--51Chr03:6647729..6647753 (25 bp)
ATTGCAGGCCGATCGTTTGACGTGA
LOC_Os03g12570
Os.12659.1.S1_at--707--8931Chr03:6647746..6647770 (25 bp)
TGACGTGACTGCTTTGTTGGCTGTA
LOC_Os03g12570
Target Sequence 
GAGAACAAGTTCGACCGGCTGGAGATGGAGCGCATGGCCGCATGCGCTGCCGCCGCCGTCCGCCACTCCGCCAAGCGCCG
CCCAAAGATGAAGCAGATTGTCCGTGCGCTGGAGGGCGACGCGTCGCTGGNACGACCTGAACGAAGGGGTGAAGCCCGGG
CAGAGCATGATGTTCAGCACGGGGTCGGAGTACGACTCCGGCAACTACGCTTCCGACATCAACAGGTTGAGGAAGGTGGC
CTTCGAGAGCAGCATCGAGGACAGCAGCGAGTACGGGACCCACTCCAGCGCCGACTCGGGGGAGCCACCCCGGCGGCAAC
AGCATCGCTAGCCGTATGATCGGAGGCGTCGAGCTAGACTTGACTATTTCTTCGGTGCGTGAGTGTGGAAAGTGGAAACT
GTGTGGTGTTGCGAGATGGCGAATCATCGATGGGAACCGGGGCGTACCGTGTATGTGGGAATTGGGATACTGTCGTGCAT
ATTGCAGGCCGATCGTTTGACGTGACTGCTTTGTTGGCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis