Browse Element(s) Details


Os.12675.1.S1_at

Description gb:AY572461.1
DB_XREF= gi:45861624
TID=Os.12675.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12675 (NCBI UniGene Cluster)
DEF=Oryza sativa putative cytokinin receptor mRNA, complete cds.
PROD=putative cytokinin receptor
FL= gb:AK122032.1 gb:AY572461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2694011/11CHASE domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26870Os.45173.5.S1_x_at4/1112+15746214..15748981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26880OsAffx.19841.1.S1_at10/1112+15755972..15757777Plastocyanin-like domain containing protein, expressed
LOC_Os12g26890OsAffx.19842.1.S1_at11/1112+15760792..15761951hypothetical protein
LOC_Os12g26890OsAffx.18924.2.S1_x_at6/1112+15760792..15761951hypothetical protein
LOC_Os12g26900NANA12+15763121..15764797retrotransposon protein, putative, unclassified
LOC_Os12g26910NANA12+15766239..15766841hypothetical protein
LOC_Os12g26920NANA12+15767690..15769491retrotransposon protein, putative, LINE subclass
LOC_Os12g26930OsAffx.31898.1.S1_at11/1112+15769967..15770413hypothetical protein
LOC_Os12g26940Os.12675.1.S1_at11/1112+15773759..15777216CHASE domain containing protein, expressed
LOC_Os12g26950NANA12+15778274..15780607transposon protein, putative, unclassified
LOC_Os12g26960Os.57289.1.S1_at11/1112+15785858..15786437expressed protein
LOC_Os12g26970OsAffx.13740.1.S1_at1/1112+15789003..15795490transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g26980Os.14491.2.S1_x_at1/1112+15798268..15802367transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0004673molecular_functionprotein histidine kinase activity
GO:0009884molecular_functioncytokinin receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12675.1.S1_at--385--51Chr12:15776320..15776344 (25 bp)
ATTGTACTTGATCTGGGCTCTGCTT
LOC_Os12g26940
Os.12675.1.S1_at--898--8711Chr12:15776430..15776454 (25 bp)
TGCTAAGCTTGGTGACTTCGGGTTA
LOC_Os12g26940
Os.12675.1.S1_at--537--2451Chr12:15776490..15776514 (25 bp)
AACACAAGTTGTCGCAGGGACCCCT
LOC_Os12g26940
Os.12675.1.S1_at--551--8431Chr12:15776549..15776573 (25 bp)
GGCCTCGCACCGAATTGGATGTGTA
LOC_Os12g26940
Os.12675.1.S1_at--374--3651Chr12:15776577..15776601 (25 bp)
CTTCGGTATTGTCCTCTTAGAGATA
LOC_Os12g26940
Os.12675.1.S1_at--381--2971Chr12:15776638..15776662 (25 bp)
AATGGAGCTTCATCACTGCTAGCCT
LOC_Os12g26940
Os.12675.1.S1_at--911--4851Chr12:15776655..15776679 (25 bp)
GCTAGCCTGGGTGCGTGATTTGTAT
LOC_Os12g26940
Os.12675.1.S1_at--1113--8211Chr12:15776686..15776710 (25 bp)
GGCAAGATTCTTGACGCAGCAGATC
LOC_Os12g26940
Os.12675.1.S1_at--27--5471Chr12:15776718..15776742 (25 bp)
GAACGGCGAGTTCAATCAGCAGCAA
LOC_Os12g26940
Os.12675.1.S1_at--429--811Chr12:15776761..15776785 (25 bp)
ATGGGTCTCTGCTGTTCACATCAAG
LOC_Os12g26940
Os.12675.1.S1_at--108--5831Chr12:15776798..15776822 (25 bp)
GACCGTCTATCGTGCAAGCTATGGA
LOC_Os12g26940
Target Sequence 
ATTGTACTTGATCTGGGCTCTGCTTTGCTCTACCTCCACCATGACTGCGAGAAATGCATTGTGCATGGAGACATCAAGCC
TGCAAATGTAATGCTTGATGTGTCACACAATGCTAAGCTTGGTGACTTCGGGTTAGCAAGGCTTGTTGAGCATGGGGGAG
AGCCACAAACAACACAAGTTGTCGCAGGGACCCCTGGATACATTGACCCAGAATTCATCAACAACCGCTGGCCTCGCACC
GAATTGGATGTGTACAGCTTCGGTATTGTCCTCTTAGAGATAGCTTGTGGCAAGCGGCCGGCATCGAGGCAGCTGCCAAA
TGGAGCTTCATCACTGCTAGCCTGGGTGCGTGATTTGTATGACCAGGGCAAGATTCTTGACGCAGCAGATCAGAGACTGA
ACGGCGAGTTCAATCAGCAGCAAATGGAGCGTGTGATCGTCATGGGTCTCTGCTGTTCACATCAAGACCCGATCCAGCGA
CCGTCTATCGTGCAAGCTATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis