Browse Element(s) Details


Os.12699.1.S1_at

Description gb:AK102392.1
DB_XREF= gi:32987601
TID=Os.12699.1
CNT=156
FEA=FLmRNA
TIER=FL+Stack
STK=64
UG=Os.12699 (NCBI UniGene Cluster)
UG_TITLE=Phosphoenolpyruvate carboxykinase mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092F07, full insert sequence.
FL= gb:AK061620.1 gb:AK102392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1505011/11Phosphoenolpyruvate carboxykinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15010Os.9532.1.S1_at11/113+8170947..8174224transposon protein, putative, unclassified, expressed
LOC_Os03g15020Os.22360.1.S1_at11/113+8175123..8181097Beta-galactosidase precursor, putative, expressed
LOC_Os03g15020OsAffx.3603.1.S1_at1/113+8175123..8181097Beta-galactosidase precursor, putative, expressed
LOC_Os03g15029NANA3+8189155..8189534NA
LOC_Os03g15040Os.26769.1.S1_at11/113+8191551..8197199FAR1 family protein, expressed
LOC_Os03g15050Os.12699.1.S1_at11/113+8197917..8203180Phosphoenolpyruvate carboxykinase, putative, expressed
LOC_Os03g15060NANA3+8206005..8208829hypothetical protein
LOC_Os03g15070OsAffx.3247.1.S1_at10/113+8216807..8219738hypothetical protein
LOC_Os03g15080Os.49583.1.S1_at11/113+8220585..8221555expressed protein
LOC_Os03g15090OsAffx.25091.1.S1_at11/113+8226667..8227302hypothetical protein
LOC_Os03g15100NANA3+8227607..8228455hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006094biological_processgluconeogenesis
GO:0004612molecular_functionphosphoenolpyruvate carboxykinase (ATP) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12699.1.S1_at--595--8551Chr03:8198520..8198544 (25 bp)
TGGAGATCCCCACTGAAATCGACGG
LOC_Os03g15050
Os.12699.1.S1_at--314--3851Chr03:8198325..8198349 (25 bp)
CTGAAGCTGGCTGGCCTGTTCAAGA
LOC_Os03g15050
Os.12699.1.S1_at--369--5651Chr03:8198251..8198275 (25 bp)
GACAGACAAGATCCTCGCTGCTGGA
LOC_Os03g15050
Os.12699.1.S1_at--522--7691Chr03:8198143..8198167 (25 bp)
GGGTCTATGCGTGTTTGCCAATGAT
LOC_Os03g15050
Os.12699.1.S1_at--892--7951Chr03:8198103..8198127 (25 bp)
GGATCGATGTGCAGCTACCGGTAGA
LOC_Os03g15050
Os.12699.1.S1_at--26--1771Chr03:8198087..8198111 (25 bp)
ACCGGTAGAGTTTAGCTAGCTTCCT
LOC_Os03g15050
Os.12699.1.S1_at--1031--4911Chr03:8198069..8198093 (25 bp)
GCTTCCTATAAGTTTCATGCGTGTC
LOC_Os03g15050
Os.12699.1.S1_at--673--3531Chr03:8198054..8198078 (25 bp)
CATGCGTGTCTGTTAGGTTCTGTCA
LOC_Os03g15050
Os.12699.1.S1_at--1158--7891Chr03:8198039..8198063 (25 bp)
GGTTCTGTCAGTTTGTCTAGCTTGA
LOC_Os03g15050
Os.12699.1.S1_at--746--8671Chr03:8198011..8198035 (25 bp)
TGTGTATGCAGTATGCTCCATTCCC
LOC_Os03g15050
Os.12699.1.S1_at--816--4271Chr03:8197980..8198004 (25 bp)
CCTGTACACATCTCTATTTTCTGAA
LOC_Os03g15050
Target Sequence 
TGGAGATCCCCACTGAAATCGACGGCNTCCCGTCTGAAATCCTCGACCCGATCAACACCTGGACGGACAAGGGCGCGTAC
AAGGAGACGCTCCTGAAGCTGGCTGGCCTGTTCAAGAAGAACTTCGAGGTGTTCGCCAACTACAAGATCGGGGGAGACAG
CAGCCTGACAGACAAGATCCTCGCTGCTGGACCAAACTTTTGAGTTACTGAAGAATAAAAAATATGCAGATAAAGAACGC
GATGAAGCTAGTCAGTTGGTTACAATAAAGAAGTGGGTCTATGCGTGTTTGCCAATGATGATGACGAAAATGTTGGATCG
ATGTGCAGCTACCGGTAGAGTTTAGCTAGCTTCCTATAAGTTTCATGCGTGTCTGTTAGGTTCTGTCAGTTTGTCTAGCT
TGANGGTGTGTATGCAGTATGCTCCATTCCCCCTTCCCCTGTACACATCTCTATTTTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis