Browse Element(s) Details


Os.12748.1.S1_at

Description gb:AK064798.1
DB_XREF= gi:32974816
TID=Os.12748.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12748 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for AT hook-containing protein (1866 bp)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000D04, full insert sequence.
FL= gb:AK064798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5185011/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51790Os.14983.1.S1_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51790Os.14983.1.S2_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51800OsAffx.27409.1.S1_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800OsAffx.27409.1.S1_x_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800Os.24682.1.A1_at2/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51810OsAffx.18284.3.S1_at9/115+29665047..29666047hypothetical protein
LOC_Os05g51820OsAffx.15202.1.S1_at11/115+29666475..29667253Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g51830Os.8519.1.S1_a_at11/115+29670091..29671678Histone deacetylase 2b, putative, expressed
LOC_Os05g51840NANA5+29671797..29673033Histone deacetylase 2a, putative, expressed
LOC_Os05g51850Os.12748.2.S1_x_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51850Os.12748.1.S1_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51860OsAffx.4685.1.S1_at10/115+29679907..29683767hypothetical protein
LOC_Os05g51870OsAffx.32051.1.S1_x_at1/115+29688175..29688624hypothetical protein
LOC_Os05g51879NANA5+29688991..29689418NA
LOC_Os05g51890OsAffx.21779.1.S1_at10/115+29691646..29693191retrotransposon protein, putative, unclassified
LOC_Os05g51890OsAffx.21779.3.S1_at3/115+29691646..29693191retrotransposon protein, putative, unclassified
LOC_Os05g51900Os.12321.1.S1_at11/115+29701884..29702451expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12748.1.S1_at--703--271Chr05:29676105..29676129 (25 bp)
ATAGTCCTTAGGTAGCACATATAGT
LOC_Os05g51850
Os.12748.1.S1_at--397--10091Chr05:29676097..29676121 (25 bp)
TAGGTAGCACATATAGTTCCTTTAG
LOC_Os05g51850
Os.12748.1.S1_at--1030--6691Chr05:29676082..29676106 (25 bp)
GTTCCTTTAGGAATGACTGGATATA
LOC_Os05g51850
Os.12748.1.S1_at--480--10192Chr02:7258224..7258500 (25 bp)
TATATGTTGCTTTTAGTGCACCCAG
NONE
Os.12748.1.S1_at--379--10691Chr05:29676048..29676072 (25 bp)
TTGCTTTTAGTGCACCCAGTGGTGA
LOC_Os05g51850
Os.12748.1.S1_at--758--5091Chr05:29676037..29676061 (25 bp)
GCACCCAGTGGTGATGAGATGCATC
LOC_Os05g51850
Os.12748.1.S1_at--783--6031Chr05:29676022..29676046 (25 bp)
GAGATGCATCAATGTTTACTTCCAA
LOC_Os05g51850
Os.12748.1.S1_at--167--9071Chr05:29676018..29676042 (25 bp)
TGCATCAATGTTTACTTCCAATTTG
LOC_Os05g51850
Os.12748.1.S1_at--712--252Chr10:1901974..1901993 (20 bp)
ATATCTCTGTTTTTTCCATGCCTAT
NONE
Os.12748.1.S1_at--1059--8771Chr05:29675959..29675983 (25 bp)
TGTTTTTTCCATGCCTATATCTTAA
LOC_Os05g51850
Os.12748.1.S1_at--72--10291Chr05:29675954..29675978 (25 bp)
TTTCCATGCCTATATCTTAAGTAAT
LOC_Os05g51850
Target Sequence 
ATAGTCCTTAGGTAGCACATATAGTTCCTTTAGGAATGACTGGATATATCATATATGTTGCTTTTAGTGCACCCAGTGGT
GATGAGATGCATCAATGTTTACTTCCAATTTGAACATNNNNNNNNGNNTCNNTCAATCAATATCTCTGTTTTTTCCATGC
CTATATCTTAAGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis