Browse Element(s) Details


Os.12749.1.S1_s_at

Description gb:AK058941.1
DB_XREF= gi:32968959
TID=Os.12749.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.12749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-H02, full insert sequence.
FL= gb:AK058941.1 gb:AK105336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6059011/11Actin-depolymerizing factor 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60530Os.9042.1.S1_at10/113+34346027..34349308Ras-related protein ARA-3, putative, expressed
LOC_Os03g60540OsAffx.13562.1.S1_at11/113+34349796..34350356Zinc finger, C2H2 type family protein
LOC_Os03g60550Os.17427.1.S1_at11/113+34351774..34358073ThiF family protein, expressed
LOC_Os03g60550OsAffx.25657.1.S1_s_at1/113+34351774..34358073ThiF family protein, expressed
LOC_Os03g60560Os.28441.1.S1_at11/113+34363114..34364034Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60570Os.15874.1.A1_at11/113+34366638..34367547Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60580Os.39973.1.S1_s_at11/113+34369405..34370315Actin-depolymerizing factor 4, putative, expressed
LOC_Os03g60590Os.12749.1.S1_s_at11/113+34370595..34373158Actin-depolymerizing factor 3, putative, expressed
LOC_Os03g60600Os.16870.1.A1_at11/113+34373945..34377386Zinc knuckle family protein, expressed
LOC_Os03g60610Os.7166.1.S1_at11/113+34378288..34383367CRAL/TRIO domain containing protein, expressed
LOC_Os03g60620Os.11822.1.S1_at11/113+34385257..34389873Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os03g60620OsAffx.29152.1.S1_s_at1/113+34385257..34389873Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os03g60630OsAffx.3658.1.S1_at11/113+34394469..34395536Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007015biological_processactin filament organization
GO:0005622cellular_componentintracellular
GO:0005739cellular_componentmitochondrion
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12749.1.S1_s_at--25--6331Chr03:34372466..34372490 (25 bp)
GATGCACCGCTTCATAACTTTCATG
LOC_Os03g60590
Os.12749.1.S1_s_at--319--8891Chr03:34372550..34372574 (25 bp)
TGAGGATTTCACTAGCAGCCTGCCT
LOC_Os03g60590
Os.12749.1.S1_s_at--682--7631Chr03:34372579..34372603 (25 bp)
GGGACTGCCGGTTTGCAATCTATGA
LOC_Os03g60590
Os.12749.1.S1_s_at--752--671Chr03:34372600..34372624 (25 bp)
ATGACTTTGACTTCCTTACTGCAGA
LOC_Os03g60590
Os.12749.1.S1_s_at--241--231Chr03:34372644..34372757 (25 bp)
ATATTCTATATCTTATGGTCCCCAG
LOC_Os03g60590
Os.12749.1.S1_s_at--833--631Chr03:34372781..34372805 (25 bp)
ATGCTTTATGCTAGCTCCAACGAAA
LOC_Os03g60590
Os.12749.1.S1_s_at--267--7171Chr03:34372869..34372893 (25 bp)
GTCTCGATGCGCTCAAAGATCGTGT
LOC_Os03g60590
Os.12749.1.S1_s_at--471--4431Chr03:34372906..34372930 (25 bp)
GCCATGCCTTTCATGATCTTGCAAT
LOC_Os03g60590
Os.12749.1.S1_s_at--550--271Chr03:34373024..34373048 (25 bp)
ATATGGCTCTATCCTGTATTTCGTT
LOC_Os03g60590
Os.12749.1.S1_s_at--1126--3871Chr03:34373037..34373061 (25 bp)
CTGTATTTCGTTGTTGCGCTCAGAA
LOC_Os03g60590
Os.12749.1.S1_s_at--1048--791Chr03:34373065..34373089 (25 bp)
ATGGGCCTGTGATGCACTGTTCCAA
LOC_Os03g60590
Target Sequence 
GATGCACCGCTTCATAACTTTCATGATGGATAACAAGGGGAAAGAGATCATTGTGGACAAGATTGGGGATCGCACAACAA
GCTATGAGGATTTCACTAGCAGCCTGCCTGAAGGGGACTGCCGGTTTGCAATCTATGACTTTGACTTCCTTACTGCAGAG
GATGTGCCAAAGAGCAGGATATTCTATATCTTATGGTCCCCAGACAATGCAAAAGTGAGGAGCAAGATGCTTTATGCTAG
CTCCAACGAAAGATTCAAGAAGGAGCTGAATGGCATTCAGTTGGAAGTGCAGGCTACTGACGCCGGCGAAATCAGTCTCG
ATGCGCTCAAAGATCGTGTGAAATAAGCATTGCCATGCCTTTCATGATCTTGCAATATGGACTTGTCTATTATGGATTTG
TGTGTCACTATAAATTTGGTAGTGTGAGACTGCTTGATGGTTTGTGGGTTTGTTCATGGAACCATGGAGATATGGCTCTA
TCCTGTATTTCGTTGTTGCGCTCAGAATGTATGGGCCTGTGATGCACTGTTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12749.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis