Browse Element(s) Details


Os.9042.1.S1_at

Description gb:AY576526.1
DB_XREF= gi:46326982
GEN=SGP
TID=Os.9042.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.9042 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) ethylene-responsive small GTP-binding protein (SGP) mRNA, complete cds.
PROD=ethylene-responsive small GTP-binding protein
FL= gb:AY579410.1 gb:AK112029.1 gb:AY576526.1 gb:AK111912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6053010/11Ras-related protein ARA-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60460Os.15432.1.S1_at10/113+34317091..34321293Peptidase family M1 containing protein, expressed
LOC_Os03g60470Os.53476.1.S1_at11/113+34321693..34323295expressed protein
LOC_Os03g60480Os.8144.1.S1_at11/113+34324835..34327108heavy metal-associated domain containing protein, expressed
LOC_Os03g60500OsAffx.28855.3.S1_x_at5/113+34330365..34332169hypothetical protein
LOC_Os03g60509Os.9929.1.S1_at11/113+34333429..34334598expressed protein
LOC_Os03g60520Os.52542.1.S1_at1/113+34336350..34339211expressed protein
LOC_Os03g60524Os.29987.1.S1_at6/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60524Os.43567.1.S1_x_at3/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60524Os.38172.1.S1_x_at2/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60530Os.9042.1.S1_at10/113+34346027..34349308Ras-related protein ARA-3, putative, expressed
LOC_Os03g60540OsAffx.13562.1.S1_at11/113+34349796..34350356Zinc finger, C2H2 type family protein
LOC_Os03g60550Os.17427.1.S1_at11/113+34351774..34358073ThiF family protein, expressed
LOC_Os03g60550OsAffx.25657.1.S1_s_at1/113+34351774..34358073ThiF family protein, expressed
LOC_Os03g60560Os.28441.1.S1_at11/113+34363114..34364034Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60570Os.15874.1.A1_at11/113+34366638..34367547Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60580Os.39973.1.S1_s_at11/113+34369405..34370315Actin-depolymerizing factor 4, putative, expressed
LOC_Os03g60590Os.12749.1.S1_s_at11/113+34370595..34373158Actin-depolymerizing factor 3, putative, expressed
LOC_Os03g60600Os.16870.1.A1_at11/113+34373945..34377386Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009873biological_processethylene mediated signaling pathway
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9042.1.S1_at--1117--1471Chr03:34348119..34348143 (25 bp)
AGCAATGGGCATTTTACTCGTTTAT
LOC_Os03g60530
Os.9042.1.S1_at--1003--751Chr03:34348145..34348169 (25 bp)
ATGTCACCGATGAATCTTCATTCAA
LOC_Os03g60530
Os.9042.1.S1_at--101--2411Chr03:34348279..34348303 (25 bp)
AAACATCGAACAACATGCCTCTGAT
LOC_Os03g60530
Os.9042.1.S1_at--274--7571Chr03:34348673..34348696 (24 bp)
GGGCTGTACCCACTTCAAAGGGACA
LOC_Os03g60530
Os.9042.1.S1_at--98--911Chr03:34348696..34348720 (25 bp)
AGGCTCTTGCTGATGAATACGGAAT
LOC_Os03g60530
Os.9042.1.S1_at--318--5691Chr03:34348956..34349050 (25 bp)
GACTGATTCCAAGCCTGAGGACCGA
LOC_Os03g60530
Os.9042.1.S1_at--796--4471Chr03:34348968..34349062 (25 bp)
GCCTGAGGACCGAACCATCAAGATC
LOC_Os03g60530
Os.9042.1.S1_at--700--5071Chr03:34349084..34349108 (25 bp)
GCAGCGGCGGCTCAGAAATCAGCTT
LOC_Os03g60530
Os.9042.1.S1_at--4--411Chr03:34349101..34349125 (25 bp)
ATCAGCTTGCTGTGGATCTTAGAAG
LOC_Os03g60530
Os.9042.1.S1_at--530--7671Chr09:15660355..15660403 (24 bp)
GGGTTCTCACCTACATGGATAAAAT
NONE
Os.9042.1.S1_at--517--191Chr03:34349179..34349203 (25 bp)
ATTTCATTCTTTGTCAGCTACTCTC
LOC_Os03g60530
Target Sequence 
AGCAATGGGCATTTTACTCGTTTATGATGTCACCGATGAATCTTCATTCAACAACATAAGAAATTGGATCAGAAACATCG
AACAACATGCCTCTGATAATGTGAACAAAATTTTGGTGGGGAACAAAGCTGATATGGATGAAAGCAAAAGGGCTGTACCC
ACTTCAAAGGGACAGGCTCTTGCTGATGAATACGGAATCAAGTTCTTTGAAACGAGTGCAAAGACAAACCTGAATGTTGA
GCAGGTTTTCTTTTCTATAGCAAGAGATATCAAACAAAGACTCTCAGAGACTGATTCCAAGCCTGAGGACCGAACCATCA
AGATCAAATCGGAAGGGGAAGCCGAGGCAGCGGCGGCTCAGAAATCAGCTTGCTGTGGATCTTAGAAGGGTTCTCACCTA
CATGGATAAAATGGTGGTGAAATGGGTGCTTGTAATTTTTATCATTTCATTCTTTGTCAGCTACTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis