Browse Element(s) Details


Os.15432.1.S1_at

Description gb:AK073744.1
DB_XREF= gi:32983767
TID=Os.15432.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15432 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068J12, full insert sequence.
FL= gb:AK073744.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6046010/11Peptidase family M1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60430OsAffx.13602.1.S1_at11/113+34297474..34301012Floral homeotic protein APETALA2, putative, expressed
LOC_Os03g60440OsAffx.3656.1.S1_at5/113+34305773..34306171hypothetical protein
LOC_Os03g60440OsAffx.3656.1.S1_x_at4/113+34305773..34306171hypothetical protein
LOC_Os03g60449NANA3+34310640..34311682hypothetical protein
LOC_Os03g60460Os.15432.1.S1_at10/113+34317091..34321293Peptidase family M1 containing protein, expressed
LOC_Os03g60470Os.53476.1.S1_at11/113+34321693..34323295expressed protein
LOC_Os03g60480Os.8144.1.S1_at11/113+34324835..34327108heavy metal-associated domain containing protein, expressed
LOC_Os03g60500OsAffx.28855.3.S1_x_at5/113+34330365..34332169hypothetical protein
LOC_Os03g60509Os.9929.1.S1_at11/113+34333429..34334598expressed protein
LOC_Os03g60520Os.52542.1.S1_at1/113+34336350..34339211expressed protein
LOC_Os03g60524Os.29987.1.S1_at6/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60524Os.43567.1.S1_x_at3/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60524Os.38172.1.S1_x_at2/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60530Os.9042.1.S1_at10/113+34346027..34349308Ras-related protein ARA-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009926biological_processauxin polar transport
GO:0005886cellular_componentplasma membrane
GO:0004179molecular_functionmembrane alanyl aminopeptidase activity
GO:0009983molecular_functiontyrosine aminopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15432.1.S1_at--72--6671NONE
GTTGAAGCTTCACAGGTCACTGCTC
NONE
Os.15432.1.S1_at--134--7091Chr03:34320774..34320798 (25 bp)
GTCACTGCTCTCGATGAGCGGTACA
LOC_Os03g60460
Os.15432.1.S1_at--421--1871Chr03:34320820..34320844 (25 bp)
ACGAGGTCAAAGTCGCGTTTCTCCA
LOC_Os03g60460
Os.15432.1.S1_at--649--8331Chr03:34320861..34320885 (25 bp)
GGCTGCAGATGCTACTTCAACGAGG
LOC_Os03g60460
Os.15432.1.S1_at--33--1311Chr03:34320970..34320994 (25 bp)
AGATGCTTGCCCATAGGATCTTCTC
LOC_Os03g60460
Os.15432.1.S1_at--152--7971Chr03:34320985..34321009 (25 bp)
GGATCTTCTCAGAGGCGCATGAATT
LOC_Os03g60460
Os.15432.1.S1_at--397--1371Chr03:34321039..34321063 (25 bp)
AGAGCATCCTCTCGAAGCATGGCTA
LOC_Os03g60460
Os.15432.1.S1_at--150--6291Chr03:34321126..34321150 (25 bp)
GATGTTTATCGACTTGTTGCTCACT
LOC_Os03g60460
Os.15432.1.S1_at--1070--4111Chr03:34321169..34321193 (25 bp)
CGCTCTCTGGAGTAACCCTGGGAAA
LOC_Os03g60460
Os.15432.1.S1_at--560--5911Chr03:34321200..34321224 (25 bp)
GAGCTCAAAACTGTGTCCTGACGGT
LOC_Os03g60460
Os.15432.1.S1_at--17--4591Chr03:34321246..34321270 (25 bp)
GCGCATCAAAATTTCCTGGTCCTAT
LOC_Os03g60460
Target Sequence 
GTTGAAGCTTCACAGGTCACTGCTCTCGATGAGCGGTACAAGCTATCAGAAAGCTGTGACTACGAGGTCAAAGTCGCGTT
TCTCCAGCTTGCAATTCCCACCGGCTGCAGATGCTACTTCAACGAGGTTGAGAAATGCTTGAAGCAAGTGGGGAGGATGA
AGTACCTTCGCCCGCTCTACAGCTCGCTGGCTCGATGCTCCGGGGAGGAGAAGATGCTTGCCCATAGGATCTTCTCAGAG
GCGCATGAATTCTATCATCCCATCGCTCGTAGCGTCGCAGAGAGCATCCTCTCGAAGCATGGCTAAGCCNGAAACCTATC
CNTTTTATATATCCTATATATTGCTGAACCTAAAGTAGGAAGAACATTTGATGTTTATCGACTTGTTGCTCACTAGTAGT
TTCATAAATTATCGCTCTCTGGAGTAACCCTGGGAAAAACTGGGAGCTCAAAACTGTGTCCTGACGGTATACAATTGTGA
ATTGTGACTGCGCATCAAAATTTCCTGGTCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis