Browse Element(s) Details


Os.12763.1.S1_x_at

Description gb:AK121536.1
DB_XREF= gi:37991159
TID=Os.12763.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12763 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031D23, full insert sequence.
FL= gb:AK121536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1253011/11glycosyl transferase, group 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12490Os.54691.1.S1_x_at1/119+7150324..7154338Zinc knuckle family protein
LOC_Os09g12500OsAffx.17667.1.S1_at11/119+7165588..7170330expressed protein
LOC_Os09g12510Os.10725.1.S1_at11/119+7171525..7172592expressed protein
LOC_Os09g12520NANA9+7175508..7176211hypothetical protein
LOC_Os09g12530Os.12763.1.S1_x_at11/119+7178985..7180868glycosyl transferase, group 1 family protein, expressed
LOC_Os09g12530Os.12763.2.S1_at11/119+7178985..7180868glycosyl transferase, group 1 family protein, expressed
LOC_Os09g12540Os.52420.1.A1_at11/119+7184218..7187146Chlorophyll a-b binding protein E, chloroplast precursor, putative, expressed
LOC_Os09g12550Os.19423.1.S1_at11/119+7188541..7195750expressed protein
LOC_Os09g12560OsAffx.6254.1.S1_at11/119+7197633..7203748Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os09g12560Os.9742.1.S1_at11/119+7197633..7203748Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os09g12570Os.5312.1.S1_at11/119+7204143..7207198Ubiquitin-conjugating enzyme spm2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12763.1.S1_x_at--444--6391Chr09:7180169..7180193 (25 bp)
GATCGATGAGCATATCCCACAGTCT
LOC_Os09g12530
Os.12763.1.S1_x_at--843--7171Chr09:7180190..7180214 (25 bp)
GTCTGCTCTTCCAAGGTTGTACAAG
LOC_Os09g12530
Os.12763.1.S1_x_at--1064--4751Chr09:7180215..7180239 (25 bp)
GCTGCAGATGCCTTTGTGCTACCAT
LOC_Os09g12530
Os.12763.1.S1_x_at--57--3511Chr09:7180277..7180301 (25 bp)
CATGTCCATGGAACTGCCGGTGATT
LOC_Os09g12530
Os.12763.1.S1_x_at--361--7851Chr09:7180348..7180372 (25 bp)
GGTACCCATTGGACATTGACAGGCT
LOC_Os09g12530
Os.12763.1.S1_x_at--489--8431Chr09:7180390..7180414 (25 bp)
GGCCATTTAAGGGTCATCTCTGTGC
LOC_Os09g12530
Os.12763.1.S1_x_at--176--471Chr09:7180405..7180429 (25 bp)
ATCTCTGTGCTGAGCCATCTGTCGA
LOC_Os09g12530
Os.12763.1.S1_x_at--1076--6131Chr09:7180517..7180541 (25 bp)
GAGGTTTTCACCAGCAATCGTTGCA
LOC_Os09g12530
Os.12763.1.S1_x_at--1049--891Chr09:7180567..7180591 (25 bp)
AGGCGCTTGCCAGTACTTAGTAGAT
LOC_Os09g12530
Os.12763.1.S1_x_at--159--8571Chr09:7180630..7180654 (25 bp)
TGGATGTATATCATGCACCGCTCAT
LOC_Os09g12530
Os.12763.1.S1_x_at--730--5091Chr09:7180644..7180668 (25 bp)
GCACCGCTCATGTACGTATGACAAT
LOC_Os09g12530
Target Sequence 
GATCGATGAGCATATCCCACAGTCTGCTCTTCCAAGGTTGTACAAGGCTGCAGATGCCTTTGTGCTACCATCCCGTGGTG
AGGGGTGGGGCAGGCCGGTGGTCGAAGCCATGTCCATGGAACTGCCGGTGATTGTGACGAATTGGTCAGGTCCAACAGAG
TACTTGAATGAGGAGAATGGGTACCCATTGGACATTGACAGGCTGACTGAGGTCACAGAAGGGCCATTTAAGGGTCATCT
CTGTGCTGAGCCATCTGTCGATCGGCTGAGGACTTTGATGAGACATGTATTCAGTGATCGAGAAGAAGCGAGGAGAAAAG
GTAAGAAGGCAAGGGAGGATATGGTTGAGAGGTTTTCACCAGCAATCGTTGCAACGATTGTTGCTGATAAGATACAACAG
GCGCTTGCCAGTACTTAGTAGATGGATAACTGAAATGTGATTACAAACTCTAACCAGAAAGTGGATGTATATCATGCACC
GCTCATGTACGTATGACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12763.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis