Browse Element(s) Details


Os.12763.3.S1_at

Description gb:AK121358.1
DB_XREF= gi:37990981
TID=Os.12763.3
CNT=33
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12763 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123D21, full insert sequence.
FL= gb:AK121358.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4425011/11Fb14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44210Os.11002.1.S1_at11/118+27700148..27701289Dihydroneopterin aldolase, putative, expressed
LOC_Os08g44220Os.54453.1.S1_at10/118+27701741..27705263expressed protein
LOC_Os08g44220Os.50429.1.S1_at1/118+27701741..27705263expressed protein
LOC_Os08g44230Os.53754.2.S1_x_at11/118+27709586..27714790DHHC zinc finger domain containing protein, expressed
LOC_Os08g44240Os.26966.1.A1_at11/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44240Os.56976.1.S1_at1/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44250Os.12763.3.S1_at11/118+27723997..27725670Fb14, putative, expressed
LOC_Os08g44260Os.18764.1.S1_at11/118+27726154..27735474myotubularin related protein, putative, expressed
LOC_Os08g44270Os.12077.1.S1_at11/118+27742299..27743739Vignain precursor, putative, expressed
LOC_Os08g44280Os.6204.1.S1_at10/118+27744500..27747204Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os08g44290Os.6831.1.S1_a_at11/118+27747410..2774934128 kDa ribonucleoprotein, chloroplast, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12763.3.S1_at--1090--9111Chr08:27725351..27725375 (25 bp)
TGCTGTTTCAGCTCAGCATTAGCCA
LOC_Os08g44250
Os.12763.3.S1_at--847--9651Chr08:27725363..27725387 (25 bp)
TCAGCATTAGCCACTCCGATAAAAT
LOC_Os08g44250
Os.12763.3.S1_at--436--3511Chr08:27725389..27725413 (25 bp)
CATGTGTGCTTTTTGTTTGCTGTCA
LOC_Os08g44250
Os.12763.3.S1_at--88--2431Chr08:27725413..27725437 (25 bp)
AAAACTTTGTTCTACTGTGATGCTA
LOC_Os08g44250
Os.12763.3.S1_at--1109--2771Chr08:27725437..27725461 (25 bp)
AAGAGCAAGGCAATAATTCCCCACC
LOC_Os08g44250
Os.12763.3.S1_at--893--3151Chr08:27725451..27725475 (25 bp)
AATTCCCCACCTTCATGTTGGACTA
LOC_Os08g44250
Os.12763.3.S1_at--317--8531Chr08:27725469..27725493 (25 bp)
TGGACTACACAAACTCTTTTCCCCT
LOC_Os08g44250
Os.12763.3.S1_at--893--2931Chr08:27725520..27725544 (25 bp)
AAGGCGTTGCATAAACCATCATGGT
LOC_Os08g44250
Os.12763.3.S1_at--1075--631Chr08:27725546..27725570 (25 bp)
ATGAAGTTTTCGTGCCTGTTTTGGA
LOC_Os08g44250
Os.12763.3.S1_at--1002--4471Chr08:27725559..27725583 (25 bp)
GCCTGTTTTGGATAATTTTGCGATA
LOC_Os08g44250
Os.12763.3.S1_at--211--7911Chr08:27725593..27725617 (25 bp)
GGTTCGATCATCATATTTTGCACGT
LOC_Os08g44250
Target Sequence 
TGCTGTTTCAGCTCAGCATTAGCCACTCCGATAAAATTCATGTGTGCTTTTTGTTTGCTGTCAAAACTTTGTTCTACTGT
GATGCTAAGAGCAAGGCAATAATTCCCCACCTTCATGTTGGACTACACAAACTCTTTTCCCCTCTCACTCCATGACTTTG
NTCTGTATCAAGGCGTTGCATAAACCATCATGGTGATGAAGTTTTCGTGCCTGTTTTGGATAATTTTGCGATAATGATGG
TTGGTTCGATCATCATATTTTGCACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12763.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis