Browse Element(s) Details


Os.12772.1.S1_at

Description gb:D12629.1
DB_XREF= gi:303856
TID=Os.12772.1
CNT=54
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12772 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for ubiquitinribosomal polyprotein, ubiquitin, ribosomal protein, complete cds.
PROD=ubiquitinribosomal polyprotein
FL= gb:D12629.1 gb:AK059011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1317011/11ubiquitin fusion protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13100Os.26893.1.S1_at11/113+7053797..7058150IBR domain containing protein, expressed
LOC_Os03g13110OsAffx.31816.1.S1_at3/113+7058666..7061399transposon protein, putative, Mariner sub-class
LOC_Os03g13120Os.53257.1.S1_at5/113+7061831..7063710hypothetical protein
LOC_Os03g13130Os.53391.1.S1_at11/113+7067416..7071607ternary complex factor MIP1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_s_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_x_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13150Os.12191.1.S1_s_at2/113+7075783..7076623Non-symbiotic hemoglobin 3, putative
LOC_Os03g13160Os.12191.1.S1_s_at2/113+7079290..7080322Non-symbiotic hemoglobin 4, putative
LOC_Os03g13170Os.12772.1.S1_at11/113+7081245..7083866ubiquitin fusion protein, putative, expressed
LOC_Os03g13170Os.51218.1.S1_at1/113+7081245..7083866ubiquitin fusion protein, putative, expressed
LOC_Os03g13180OsAffx.3220.1.S1_at11/113+7086366..7087553Peroxidase 53 precursor, putative, expressed
LOC_Os03g13190OsAffx.3221.1.S1_at11/113+7090057..7094241transposon protein, putative, unclassified, expressed
LOC_Os03g13200Os.9893.1.S1_at11/113+7103982..7106242Peroxidase 53 precursor, putative, expressed
LOC_Os03g13210Os.159.1.S1_s_at11/113+7107383..7109455Peroxidase N precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0016567biological_processprotein ubiquitination
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12772.1.S1_at--710--9411Chr03:7083411..7083435 (25 bp)
TCGTCCTCAGGCTCCGTGGCGGTAT
LOC_Os03g13170
Os.12772.1.S1_at--488--7531Chr03:7083396..7083420 (25 bp)
GTGGCGGTATCATCGAGCCGTCGCT
LOC_Os03g13170
Os.12772.1.S1_at--918--10311Chr03:7083373..7083396 (24 bp)
TTTCAGGCGCTTGCCCGCAAGTACA
LOC_Os03g13170
Os.12772.1.S1_at--154--2751Chr03:7081452..7081476 (25 bp)
AAGAACTAGAGCGTCACTCGCCGGG
LOC_Os03g13170
Os.12772.1.S1_at--423--8111Chr03:7081422..7081446 (25 bp)
GGACTGGTTAAATCAATCGTCATAT
LOC_Os03g13170
Os.12772.1.S1_at--442--1411Chr03:7081396..7081420 (25 bp)
AGACTTTTATGCTTCCGTTGTTATC
LOC_Os03g13170
Os.12772.1.S1_at--1141--431Chr03:7081374..7081398 (25 bp)
ATCTCCCTGGATGTTGTTGAACCGT
LOC_Os03g13170
Os.12772.1.S1_at--442--6651Chr03:7081359..7081383 (25 bp)
GTTGAACCGTGTTTTACTGTGCTGG
LOC_Os03g13170
Os.12772.1.S1_at--906--9911Chr03:7081345..7081369 (25 bp)
TACTGTGCTGGATGCTTCAGCTTCT
LOC_Os03g13170
Os.12772.1.S1_at--1158--10491Chr03:7081330..7081354 (25 bp)
TTCAGCTTCTTGTTTTGACGGTCGT
LOC_Os03g13170
Os.12772.1.S1_at--100--10691Chr03:7081316..7081340 (25 bp)
TTGACGGTCGTGGTATATGGTAATT
LOC_Os03g13170
Target Sequence 
TCGTCCTCAGGCTCCGTGGCGGTATCATCGAGCCGTCGCTTTCAGGCGCTTGCCCGCAAGTACAACCAGGACAAGATGAT
CTGCCGCAAATGCTATGCGCGCCTGCACCCTAGGGCTGTCAACTGCCGCAAGAAGAAGTGTGGTCACAGCAACCAGCTGA
GGCCCAAGAAGAAGATCAAGAACTAGAGCGTCACTCGCCGGGTTCANTGGACTGGTTAAATCAATCGTCATATTAGACTT
TTATGCTTCCGTTGTTATCTCCCTGGATGTTGTTGAACCGTGTTTTACTGTGCTGGATGCTTCAGCTTCTTGTTTTGACG
GTCGTGGTATATGGTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis