Browse Element(s) Details


Os.9893.1.S1_at

Description gb:AK104936.1
DB_XREF= gi:32990145
TID=Os.9893.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G10, full insert sequence.
FL= gb:AK104936.1 gb:AK068353.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1320011/11Peroxidase 53 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13160Os.12191.1.S1_s_at2/113+7079290..7080322Non-symbiotic hemoglobin 4, putative
LOC_Os03g13170Os.12772.1.S1_at11/113+7081245..7083866ubiquitin fusion protein, putative, expressed
LOC_Os03g13170Os.51218.1.S1_at1/113+7081245..7083866ubiquitin fusion protein, putative, expressed
LOC_Os03g13180OsAffx.3220.1.S1_at11/113+7086366..7087553Peroxidase 53 precursor, putative, expressed
LOC_Os03g13190OsAffx.3221.1.S1_at11/113+7090057..7094241transposon protein, putative, unclassified, expressed
LOC_Os03g13200Os.9893.1.S1_at11/113+7103982..7106242Peroxidase 53 precursor, putative, expressed
LOC_Os03g13210Os.159.1.S1_s_at11/113+7107383..7109455Peroxidase N precursor, putative, expressed
LOC_Os03g13220Os.9335.1.S1_at10/113+7111680..7115147expressed protein
LOC_Os03g13230Os.53534.1.S1_at11/113+7115764..7118010pentatricopeptide, putative, expressed
LOC_Os03g13240Os.11621.1.S1_at11/113+7118218..7122633Peptide transporter PTR2, putative, expressed
LOC_Os03g13250Os.33446.1.A1_at11/113+7126391..7130453Peptide transporter PTR2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9893.1.S1_at--279--2551Chr03:7104384..7104408 (25 bp)
AACTCGTCGGCGCTGAACGACCTGG
LOC_Os03g13200
Os.9893.1.S1_at--926--5471Chr03:7104331..7104355 (25 bp)
GAACTACTTCGCCAACATCGAGGTG
LOC_Os03g13200
Os.9893.1.S1_at--430--2011Chr03:7104326..7104350 (25 bp)
ACTTCGCCAACATCGAGGTGAACCG
LOC_Os03g13200
Os.9893.1.S1_at--472--2491Chr03:7104237..7104261 (25 bp)
AACAGCTTCGCCATCAGCCAGAAGG
LOC_Os03g13200
Os.9893.1.S1_at--1060--3551Chr03:7104226..7104250 (25 bp)
CATCAGCCAGAAGGCCTTCTTCAAG
LOC_Os03g13200
Os.9893.1.S1_at--982--4911Chr03:7104200..7104224 (25 bp)
GCTTCGCCAGGTCCATGGTCAACAT
LOC_Os03g13200
Os.9893.1.S1_at--1050--571Chr03:7104168..7104192 (25 bp)
ATCCAGCCGCTGACGGGCAGCCAGG
LOC_Os03g13200
Os.9893.1.S1_at--536--5351Chr03:7104133..7104157 (25 bp)
GAAGAGCTGCAGATTTGTCAATGGA
LOC_Os03g13200
Os.9893.1.S1_at--167--951Chr03:7104096..7104120 (25 bp)
AGGACCCGTTAGCTCGAAGGACTGA
LOC_Os03g13200
Os.9893.1.S1_at--916--951Chr03:7104079..7104103 (25 bp)
AGGACTGAGTTATTCTTGTACTGTA
LOC_Os03g13200
Os.9893.1.S1_at--163--3971Chr03:7104023..7104047 (25 bp)
CGGATTTGCTAAATTTATGACGGCA
LOC_Os03g13200
Target Sequence 
AACTCGTCGGCGCTGAACGACCTGGACCCGACCACGCCGGACGCCTTCGACAAGAACTACTTCGCCAACATCGAGGTGAA
CCGCGGCTTCCTCCAGTCCGACCAGGAGCTCCTGTCCACGCCGGGCGCGCCCACGGCGGCGATCGTCAACAGCTTCGCCA
TCAGCCAGAAGGCCTTCTTCAAGAGCTTCGCCAGGTCCATGGTCAACATGGGGAACATCCAGCCGCTGACGGGCAGCCAG
GGGGAGGTCCGGAAGAGCTGCAGATTTGTCAATGGAAGTTAAGGGAGGAGGACCCGTTAGCTCGAAGGACTGAGTTATTC
TTGTACTGTAAAACGGATTGAAGATCAATTTATTTCATTTACGGATTTGCTAAATTTATGACGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis