Browse Element(s) Details


Os.9335.1.S1_at

Description gb:AK070766.1
DB_XREF= gi:32980789
TID=Os.9335.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073F07, full insert sequence.
FL= gb:AK060384.1 gb:AK070766.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1322010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13180OsAffx.3220.1.S1_at11/113+7086366..7087553Peroxidase 53 precursor, putative, expressed
LOC_Os03g13190OsAffx.3221.1.S1_at11/113+7090057..7094241transposon protein, putative, unclassified, expressed
LOC_Os03g13200Os.9893.1.S1_at11/113+7103982..7106242Peroxidase 53 precursor, putative, expressed
LOC_Os03g13210Os.159.1.S1_s_at11/113+7107383..7109455Peroxidase N precursor, putative, expressed
LOC_Os03g13220Os.9335.1.S1_at10/113+7111680..7115147expressed protein
LOC_Os03g13230Os.53534.1.S1_at11/113+7115764..7118010pentatricopeptide, putative, expressed
LOC_Os03g13240Os.11621.1.S1_at11/113+7118218..7122633Peptide transporter PTR2, putative, expressed
LOC_Os03g13250Os.33446.1.A1_at11/113+7126391..7130453Peptide transporter PTR2, putative, expressed
LOC_Os03g13260Os.28346.5.S1_at11/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.3.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.5.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.4.S1_x_at9/113+7132495..7140483retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9335.1.S1_at--79--8171Chr03:7114078..7114102 (25 bp)
GGAACTATTGGATGTTTCCCAACGA
LOC_Os03g13220
Os.9335.1.S1_at--385--1591Chr03:7114726..7114750 (25 bp)
AGCTCCCTAGCCTTCTAAAGATGTT
LOC_Os03g13220
Os.9335.1.S1_at--1099--8251Chr03:7114781..7114805 (25 bp)
GGCAGCATATCCACGAATCAACAAT
LOC_Os03g13220
Os.9335.1.S1_at--1044--2791Chr03:7114825..7114849 (25 bp)
AAGATCCAGCGATTTGAGGCCGCTC
LOC_Os03g13220
Os.9335.1.S1_at--356--6931Chr03:7114871..7114895 (25 bp)
GTAGGCACCATACCATGACTGTTTT
LOC_Os03g13220
Os.9335.1.S1_at--819--2131Chr03:7114946..7114970 (25 bp)
ACAGTGAATCCAGTGCTTTCTTCGG
LOC_Os03g13220
Os.9335.1.S1_at--322--4891Chr03:7114960..7114984 (25 bp)
GCTTTCTTCGGTCTTTGATCTCAAA
LOC_Os03g13220
Os.9335.1.S1_at--386--2451Chr03:7115010..7115034 (25 bp)
AAAATCGCTCGTGTTGTACATGATG
LOC_Os03g13220
Os.9335.1.S1_at--331--2511Chr03:7115095..7115119 (25 bp)
AACATCTTTTGTCGAACCTTTCACT
LOC_Os03g13220
Os.9335.1.S1_at--848--5431Chr03:7115108..7115132 (25 bp)
GAACCTTTCACTTCTATTACACGAA
LOC_Os03g13220
Os.9335.1.S1_at--17--10491Chr03:7115124..7115148 (25 bp)
TTACACGAAATGTTCTTCCCAGATA
NONE
Target Sequence 
GGAACTATTGGATGTTTCCCAACGATTGAAGNCCGCAAGTGAAGTTAATGCTNCCATTCTTACAAGCCAAAGTCATGAGA
AAGATCCAAAGCTCCCTAGCCTTCTAAAGATGTTAATTTGGACTCAAAACCAACTGGACGAAAAGGCAGCATATCCACGA
ATCAACAATTTCTCCACTGCCGCACTTGAAGATCCAGCGATTTGAGGCCGCTCGGGAGGGGATGGCTAAAGAATGTAGGC
ACCATACCATGACTGTTTTCACACATTGTACTTNCTGGATCTGTTGTGCTCTTCACCTGCAAGGCTGCAACAGTGAATCC
AGTGCTTTCTTCGGTCTTTGATCTCAAATGCAAAAAACGTGGAATCAGAAAAAAAAATCGCTCGTGTTGTACATGATGTA
GAAGATGTTCATCACATTTTAATCTGTGAAAAATGTTCGATTTGATTTGAGTTCATTCAACATCTTTTGTCGAACCTTTC
ACTTCTATTACACGAAATGTTCTTCCCAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis