Browse Element(s) Details


Os.159.1.S1_s_at

Description gb:D14482.1
DB_XREF= gi:531045
TID=Os.159.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.159 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) prxRPN mRNA for putative peroxidase, complete cds.
PROD=putative peroxidase
FL= gb:D14482.1 gb:AK103019.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1321011/11Peroxidase N precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13170Os.12772.1.S1_at11/113+7081245..7083866ubiquitin fusion protein, putative, expressed
LOC_Os03g13170Os.51218.1.S1_at1/113+7081245..7083866ubiquitin fusion protein, putative, expressed
LOC_Os03g13180OsAffx.3220.1.S1_at11/113+7086366..7087553Peroxidase 53 precursor, putative, expressed
LOC_Os03g13190OsAffx.3221.1.S1_at11/113+7090057..7094241transposon protein, putative, unclassified, expressed
LOC_Os03g13200Os.9893.1.S1_at11/113+7103982..7106242Peroxidase 53 precursor, putative, expressed
LOC_Os03g13210Os.159.1.S1_s_at11/113+7107383..7109455Peroxidase N precursor, putative, expressed
LOC_Os03g13220Os.9335.1.S1_at10/113+7111680..7115147expressed protein
LOC_Os03g13230Os.53534.1.S1_at11/113+7115764..7118010pentatricopeptide, putative, expressed
LOC_Os03g13240Os.11621.1.S1_at11/113+7118218..7122633Peptide transporter PTR2, putative, expressed
LOC_Os03g13250Os.33446.1.A1_at11/113+7126391..7130453Peptide transporter PTR2, putative, expressed
LOC_Os03g13260Os.28346.5.S1_at11/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.3.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.5.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.4.S1_x_at9/113+7132495..7140483retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009624biological_processresponse to nematode
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.159.1.S1_s_at--497--5691Chr03:7107777..7107801 (25 bp)
GACTTCGGCAACTCCATGGTCAAGA
LOC_Os03g13210
Os.159.1.S1_s_at--1079--8231Chr03:7107674..7107698 (25 bp)
GGCAAAGATTTTTTGCATCTGCCAT
LOC_Os03g13210
Os.159.1.S1_s_at--399--6531Chr03:7107637..7107661 (25 bp)
GATTTGCCAGAAGCTATATCGTCTT
LOC_Os03g13210
Os.159.1.S1_s_at--703--251Chr03:7107622..7107646 (25 bp)
ATATCGTCTTCTTGGACTCAAGTGT
LOC_Os03g13210
Os.159.1.S1_s_at--283--4031Chr03:7107556..7107580 (25 bp)
CGTTTTGTTCAAGCTATCTAGGATT
LOC_Os03g13210
Os.159.1.S1_s_at--179--2711Chr03:7107546..7107570 (25 bp)
AAGCTATCTAGGATTCTCTCTCCAA
LOC_Os03g13210
Os.159.1.S1_s_at--38--6571Chr03:7107535..7107559 (25 bp)
GATTCTCTCTCCAATGCACGAGTAG
LOC_Os03g13210
Os.159.1.S1_s_at--806--651Chr03:7107496..7107520 (25 bp)
ATGCAAAGTTGCTCGTCCTACACGA
LOC_Os03g13210
Os.159.1.S1_s_at--25--7271Chr03:7107482..7107506 (25 bp)
GTCCTACACGAATCTGCAGCTGCAT
LOC_Os03g13210
Os.159.1.S1_s_at--93--3851Chr03:7107469..7107493 (25 bp)
CTGCAGCTGCATTTTCAGTGGGTGT
LOC_Os03g13210
Os.159.1.S1_s_at--865--7711Chr03:7107450..7107474 (25 bp)
GGGTGTATCACCAATTATTAGAGCA
LOC_Os03g13210
Target Sequence 
GACTTCGGCAACTCCATGGTCAAGATGGGCAACATCAGCCCTCTCACCGGCTCTGCCGGCCAGATTCGCAAGAACTGCAG
GGCCGTCAACTGATGAGCAAAAAGGCAAAGATTTTTTGCATCTGCCATGACCCCATCTTGGATTTGCCAGAAGCTATATC
GTCTTCTTGGACTCAAGTGTGAATCTGTCGTTTTTAATGTGTTGTGGAGCGCTACATGTTTCGTTTTGTTCAAGCTATCT
AGGATTCTCTCTCCAATGCACGAGTAGAATAAGCAATTAGCATGCAAAGTTGCTCGTCCTACACGAATCTGCAGCTGCAT
TTTCAGTGGGTGTATCACCAATTATTAGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.159.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis