Browse Element(s) Details


Os.53534.1.S1_at

Description gb:AK073159.1
DB_XREF= gi:32983182
TID=Os.53534.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53534 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033003F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033003F09, full insert sequence.
FL= gb:AK073159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1323011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13190OsAffx.3221.1.S1_at11/113+7090057..7094241transposon protein, putative, unclassified, expressed
LOC_Os03g13200Os.9893.1.S1_at11/113+7103982..7106242Peroxidase 53 precursor, putative, expressed
LOC_Os03g13210Os.159.1.S1_s_at11/113+7107383..7109455Peroxidase N precursor, putative, expressed
LOC_Os03g13220Os.9335.1.S1_at10/113+7111680..7115147expressed protein
LOC_Os03g13230Os.53534.1.S1_at11/113+7115764..7118010pentatricopeptide, putative, expressed
LOC_Os03g13240Os.11621.1.S1_at11/113+7118218..7122633Peptide transporter PTR2, putative, expressed
LOC_Os03g13250Os.33446.1.A1_at11/113+7126391..7130453Peptide transporter PTR2, putative, expressed
LOC_Os03g13260Os.28346.5.S1_at11/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.3.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.5.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.4.S1_x_at9/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13274Os.2360.1.S1_s_at11/113+7142498..7147975POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53534.1.S1_at--94--8351Chr03:7117417..7117441 (25 bp)
GGCGGACATTGAATTTGTTCTCCAT
LOC_Os03g13230
Os.53534.1.S1_at--888--951Chr03:7117467..7117491 (25 bp)
AGGACATTGGCTACCACAGCGAGCG
LOC_Os03g13230
Os.53534.1.S1_at--725--211Chr03:7117504..7117528 (25 bp)
ATTTGGGATCATTGCCACTCCGGAG
LOC_Os03g13230
Os.53534.1.S1_at--70--8131Chr03:7117630..7117654 (25 bp)
GGACTCGAATAGGTTCCATCACTTC
LOC_Os03g13230
Os.53534.1.S1_at--1079--7371Chr03:7117687..7117711 (25 bp)
GTGACCCGCACACTGCATATATGAA
LOC_Os03g13230
Os.53534.1.S1_at--1080--5331Chr03:7117709..7117733 (25 bp)
GAAGTAGTTTTGTCTCCCGATTGGA
LOC_Os03g13230
Os.53534.1.S1_at--406--8051Chr03:7117731..7117755 (25 bp)
GGAGCTACTATTACTCTTTGTACGG
LOC_Os03g13230
Os.53534.1.S1_at--1114--251Chr03:7117765..7117789 (25 bp)
ATATGCGGCAGCAACTGATCTGACC
LOC_Os03g13230
Os.53534.1.S1_at--903--1411Chr03:7117828..7117852 (25 bp)
AGAAATTCCTTGTCAGGCTGACCCT
LOC_Os03g13230
Os.53534.1.S1_at--1029--7811Chr03:7117854..7117878 (25 bp)
GGTAAACGGTCTCACCTTTTATCAT
LOC_Os03g13230
Os.53534.1.S1_at--187--431Chr03:7117874..7117898 (25 bp)
ATCATTCGTGCCTATCCTGATGAAA
LOC_Os03g13230
Target Sequence 
GGCGGACATTGAATTTGTTCTCCATGATGTCGAAGATGAGCAGAAGGAGCAGGACATTGGCTACCACAGCGAGCGGCTTG
CTGTTGCATTTGGGATCATTGCCACTCCGGAGGGTTCCCCGATCAAGGTTTTCAAGAACCTGCGCATTTGCGGGGACTGC
CATGCTGCTATTAAGCTCATATCGCAGATTGTGCAGAGAGATATCATTGTTAGGGACTCGAATAGGTTCCATCACTTCAA
GGACGGGATATGTTCTTGCAGAGATTACTGGTGACCCGCACACTGCATATATGAAGTAGTTTTGTCTCCCGATTGGAGCT
ACTATTACTCTTTGTACGGCTAATGTTAATATGCGGCAGCAACTGATCTGACCAAAGGTTTTCACTGGTTCGAGTGATTA
AGTTCTGGAAAAGAAATTCCTTGTCAGGCTGACCCTAGGTAAACGGTCTCACCTTTTATCATTCGTGCCTATCCTGATGA
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis