Browse Element(s) Details


Os.2360.1.S1_s_at

Description gb:AF140606.1
DB_XREF= gi:6409175
GEN=NRT1
TID=Os.2360.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2360 (NCBI UniGene Cluster)
DEF=Oryza sativa nitrate transporter (NRT1) mRNA, complete cds.
PROD=nitrate transporter
FL= gb:AF140606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1327411/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13230Os.53534.1.S1_at11/113+7115764..7118010pentatricopeptide, putative, expressed
LOC_Os03g13240Os.11621.1.S1_at11/113+7118218..7122633Peptide transporter PTR2, putative, expressed
LOC_Os03g13250Os.33446.1.A1_at11/113+7126391..7130453Peptide transporter PTR2, putative, expressed
LOC_Os03g13260Os.28346.5.S1_at11/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.3.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.5.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.4.S1_x_at9/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13274Os.2360.1.S1_s_at11/113+7142498..7147975POT family protein, expressed
LOC_Os03g13290Os.50738.1.A1_x_at1/113+7149135..7150248hypothetical protein
LOC_Os03g13290Os.51278.1.S1_at1/113+7149135..7150248hypothetical protein
LOC_Os03g13300Os.47761.1.S1_at8/113+7160193..7163149Glutamate decarboxylase, putative, expressed
LOC_Os03g13310NANA3+7163506..7164234Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g13320OsAffx.10490.1.S1_at10/113+7166714..7173522retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2360.1.S1_s_at--1158--7531Chr03:7142938..7142962 (25 bp)
GTGGCTGTTCCAATGAGCATCCTGT
LOC_Os03g13274
Os.2360.1.S1_s_at--569--1791Chr03:7142906..7142930 (25 bp)
ACCCCAGTACTTCCTGATAGGCGTG
LOC_Os03g13274
Os.2360.1.S1_s_at--1137--931Chr03:7142838..7142862 (25 bp)
AGGAATCACCGGACGCCATGAGAAG
LOC_Os03g13274
Os.2360.1.S1_s_at--503--1451Chr03:7142818..7142842 (25 bp)
AGAAGCTTATGTCTCGCATTCTCAC
LOC_Os03g13274
Os.2360.1.S1_s_at--296--10571Chr03:7142800..7142824 (25 bp)
TTCTCACTTGCTAACGTTTCGGCAG
LOC_Os03g13274
Os.2360.1.S1_s_at--993--931Chr03:7142777..7142801 (25 bp)
AGGAAGTTACCTCAGCTCGTTTATC
LOC_Os03g13274
Os.2360.1.S1_s_at--930--3771Chr03:7142762..7142786 (25 bp)
CTCGTTTATCGTTTCTCTTGTGCCA
LOC_Os03g13274
Os.2360.1.S1_s_at--1095--10811Chr03:7142745..7142769 (25 bp)
TTGTGCCAGTGTTCACAGCCAGAGA
LOC_Os03g13274
Os.2360.1.S1_s_at--362--931Chr03:7142720..7142744 (25 bp)
AGGCAGTCCTGGATGGATACCTGAT
LOC_Os03g13274
Os.2360.1.S1_s_at--134--1851Chr03:7142688..7142712 (25 bp)
ACGAAGGGCATTTGGATCGGTTCTT
LOC_Os03g13274
Os.2360.1.S1_s_at--326--8291Chr03:7142588..7142612 (25 bp)
GGCTTCCTGAACCTTGTTAACATTA
LOC_Os03g13274
Target Sequence 
GTGGCTGTTCCAATGAGCATCCTGTGGCAGGGACCCCAGTACTTCCTGATAGGCGTGGGAGAGGTGTTCTCAAACATTGG
GTTAACTGAATTTTTCTACCAGGAATCACCGGACGCCATGAGAAGCTTATGTCTCGCATTCTCACTTGCTAACGTTTCGG
CAGGAAGTTACCTCAGCTCGTTTATCGTTTCTCTTGTGCCAGTGTTCACAGCCAGAGAAGGCAGTCCTGGATGGATACCT
GATAACTTGAACGAAGGGCATTTGGATCGGTTCTTCTGGATGATGGCTGGCTTGTGTTTCTTGAATATGCTGGCCTTTGT
GTTCTGTGCCATGAGGTACAAATGTAAGAAGGCTTCCTGAACCTTGTTAACATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2360.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis