Browse Element(s) Details


Os.50738.1.A1_x_at

Description gb:AY220684.1
DB_XREF= gi:29292998
TID=Os.50738.1
CNT=1
FEA=RNA
TIER=ConsEnd
STK=0
UG=Os.50738 (NCBI UniGene Cluster)
UG_TITLE=Box CD snoRNA J46.1, complete sequence
DEF=Oryza sativa box CD snoRNA J46.1, complete sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g132901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13250Os.33446.1.A1_at11/113+7126391..7130453Peptide transporter PTR2, putative, expressed
LOC_Os03g13260Os.28346.5.S1_at11/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.3.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.5.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.4.S1_x_at9/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13274Os.2360.1.S1_s_at11/113+7142498..7147975POT family protein, expressed
LOC_Os03g13290Os.50738.1.A1_x_at1/113+7149135..7150248hypothetical protein
LOC_Os03g13290Os.51278.1.S1_at1/113+7149135..7150248hypothetical protein
LOC_Os03g13300Os.47761.1.S1_at8/113+7160193..7163149Glutamate decarboxylase, putative, expressed
LOC_Os03g13310NANA3+7163506..7164234Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g13320OsAffx.10490.1.S1_at10/113+7166714..7173522retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50738.1.A1_x_at--892--5811Chr07:1679220..1679244 (25 bp)
GACCCGGCTAAAAAAATATCTCTCT
NONE
Os.50738.1.A1_x_at--1102--2412Chr07:1679230..1679254 (25 bp)
AAAAAATATCTCTCTCTCCTTTCTC
NONE
Os.50738.1.A1_x_at--722--9511Chr07:1679242..1679266 (25 bp)
TCTCTCCTTTCTCCTAAATGAGGTT
NONE
Os.50738.1.A1_x_at--354--9491Chr07:1679244..1679268 (25 bp)
TCTCCTTTCTCCTAAATGAGGTTGC
NONE
Os.50738.1.A1_x_at--24--9251Chr07:1679246..1679270 (25 bp)
TCCTTTCTCCTAAATGAGGTTGCTC
NONE
Os.50738.1.A1_x_at--687--3671Chr07:1679248..1679272 (25 bp)
CTTTCTCCTAAATGAGGTTGCTCAA
NONE
Os.50738.1.A1_x_at--899--10571Chr07:1679250..1679274 (25 bp)
TTCTCCTAAATGAGGTTGCTCAACT
NONE
Os.50738.1.A1_x_at--435--2291Chr07:1679257..1679281 (25 bp)
AAATGAGGTTGCTCAACTAGCACTA
NONE
Os.50738.1.A1_x_at--169--711Chr07:1679259..1679283 (25 bp)
ATGAGGTTGCTCAACTAGCACTACA
NONE
Os.50738.1.A1_x_at--1103--6151Chr07:1679261..1679285 (25 bp)
GAGGTTGCTCAACTAGCACTACATT
NONE
Os.50738.1.A1_x_at--719--6671Chr07:1679264..1679288 (25 bp)
GTTGCTCAACTAGCACTACATTTGT
NONE
Target Sequence 
GACCCGGCTAAAAAAATATCTCTCTCTCCTTTCTCCTAAATGAGGTTGCTCAACTAGCACTACATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50738.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis