Browse Element(s) Details


Os.51278.1.S1_at

Description gb:AK062402.1
DB_XREF= gi:32972420
TID=Os.51278.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-E04, full insert sequence.
FL= gb:AK062402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g132901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13250Os.33446.1.A1_at11/113+7126391..7130453Peptide transporter PTR2, putative, expressed
LOC_Os03g13260Os.28346.5.S1_at11/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.3.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.5.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.4.S1_x_at9/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13274Os.2360.1.S1_s_at11/113+7142498..7147975POT family protein, expressed
LOC_Os03g13290Os.50738.1.A1_x_at1/113+7149135..7150248hypothetical protein
LOC_Os03g13290Os.51278.1.S1_at1/113+7149135..7150248hypothetical protein
LOC_Os03g13300Os.47761.1.S1_at8/113+7160193..7163149Glutamate decarboxylase, putative, expressed
LOC_Os03g13310NANA3+7163506..7164234Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g13320OsAffx.10490.1.S1_at10/113+7166714..7173522retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51278.1.S1_at--419--4551Chr01:37575449..37575473 (25 bp)
GCCCATGCATGTCGCGACGCCTGTG
NONE
Os.51278.1.S1_at--592--1831Chr01:37575535..37575559 (25 bp)
ACGCACGCGCACACATGGTGCTCTG
NONE
Os.51278.1.S1_at--852--811Chr01:37575549..37575573 (25 bp)
ATGGTGCTCTGCCTTCTCCCTGTAC
NONE
Os.51278.1.S1_at--65--9311Chr01:37575607..37575631 (25 bp)
TCCCCTCTCATCAGTAGCTGGCTAG
NONE
Os.51278.1.S1_at--1076--9991Chr01:37575621..37575645 (25 bp)
TAGCTGGCTAGCTTCACACGCAAAA
NONE
Os.51278.1.S1_at--469--8311Chr01:37575626..37575650 (25 bp)
GGCTAGCTTCACACGCAAAATACAT
NONE
Os.51278.1.S1_at--362--2451Chr01:37575642..37575666 (25 bp)
AAAATACATTCACACGCATCGGCTA
NONE
Os.51278.1.S1_at--408--2151Chr01:37575653..37575677 (25 bp)
ACACGCATCGGCTACATAGCTCACT
NONE
Os.51278.1.S1_at--886--291Chr01:37575668..37575692 (25 bp)
ATAGCTCACTCTCACTGACATCATG
NONE
Os.51278.1.S1_at--748--5671Chr01:37575684..37575708 (25 bp)
GACATCATGTCACGTCAATGCAAGG
NONE
Os.51278.1.S1_at--544--9732Chr01:37575698..37575722 (25 bp)
TCAATGCAAGGTGTTTGTTGCTATC
NONE
Target Sequence 
GCCCATGCATGTCGCGACGCCTGTGCCGCCGTCGCCGCCTCCCCCGCCGGGGCTCTGCTCCACGTTGGCGTCGGCGCCGC
CGGCCCACGCACGCGCACACATGGTGCTCTGCCTTCTCCCTGTACCTCTCCAGTGTCTCCCTGTGCCTCTCCTCGTGCTC
CCCTCTCATCAGTAGCTGGCTAGCTTCACACGCAAAATACATTCACACGCATCGGCTACATAGCTCACTCTCACTGACAT
CATGTCACGTCAATGCAAGGTGTTTGTTGCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis