Browse Element(s) Details


Os.47761.1.S1_at

Description gb:AK071556.1
DB_XREF= gi:32981579
TID=Os.47761.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47761 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) glutamate decarboxylase (GAD3) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101A16, full insert sequence.
FL= gb:AY187941.1 gb:AK071556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g133008/11Glutamate decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13260Os.28346.5.S1_at11/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.3.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.5.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.4.S1_x_at9/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13274Os.2360.1.S1_s_at11/113+7142498..7147975POT family protein, expressed
LOC_Os03g13290Os.50738.1.A1_x_at1/113+7149135..7150248hypothetical protein
LOC_Os03g13290Os.51278.1.S1_at1/113+7149135..7150248hypothetical protein
LOC_Os03g13300Os.47761.1.S1_at8/113+7160193..7163149Glutamate decarboxylase, putative, expressed
LOC_Os03g13310NANA3+7163506..7164234Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g13320OsAffx.10490.1.S1_at10/113+7166714..7173522retrotransposon protein, putative, unclassified, expressed
LOC_Os03g13340OsAffx.3223.1.S1_at11/113+7178091..7179239hypothetical protein
LOC_Os03g13350NANA3+7181451..7185948retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006536biological_processglutamate metabolism
GO:0006807biological_processnitrogen compound metabolism
GO:0004351molecular_functionglutamate decarboxylase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47761.1.S1_at--705--2571Chr03:7162793..7162817 (25 bp)
AACGGCGTCTGCTAGTCTCAATTAG
LOC_Os03g13300
Os.47761.1.S1_at--385--7471Chr03:7162887..7162911 (25 bp)
GTGTGAGCTACCATTACTGTATTTT
LOC_Os03g13300
Os.47761.1.S1_at--11--3131Chr03:7162926..7162950 (25 bp)
AATTTGAGTGGAGCCTTCGATTCTA
LOC_Os03g13300
Os.47761.1.S1_at--888--3631Chr03:7162940..7162964 (25 bp)
CTTCGATTCTAGGTCCAAGGTACTA
LOC_Os03g13300
Os.47761.1.S1_at--1078--2351Chr03:7162981..7163005 (25 bp)
AAAGCCATGCTCTTGCTTTTGTTTC
LOC_Os03g13300
Os.47761.1.S1_at--1042--6831Chr03:7163001..7163025 (25 bp)
GTTTCTCCTTCTGATAATCTGTGCA
LOC_Os03g13300
Os.47761.1.S1_at--31--6991Chr03:7163074..7163098 (25 bp)
GTACGATTTTGATGTTCCCTGTTCT
LOC_Os03g13300
Os.47761.1.S1_at--164--6711Chr03:7163087..7163111 (25 bp)
GTTCCCTGTTCTAGTGTAAGTGCCA
LOC_Os03g13300
Os.47761.1.S1_at--1108--4631Chr03:7163157..7163181 (25 bp)
GCGTAATTTCCGTGCTTGATGTTGT
NONE
Os.47761.1.S1_at--399--731Chr03:7163175..7163199 (25 bp)
ATGTTGTGCTTGCTTCTTGCCGTTA
NONE
Os.47761.1.S1_at--255--10671Chr03:7163191..7163215 (25 bp)
TTGCCGTTATATGTTCCCCGTAGTA
NONE
Target Sequence 
AACGGCGTCTGCTAGTCTCAATTAGCGACAGCNCCACGGCCTACAAATCCACAAATCAAGACGCTGCTGATTGATATGAT
TAATTACATTCATGGTGTGAGCTACCATTACTGTATTTTTTTTTTACCGTGCTAATTTGAGTGGAGCCTTCGATTCTAGG
TCCAAGGTACTAGTAGAGTTCATAACCAAAAGCCATGCTCTTGCTTTTGTTTCTCCTTCTGATAATCTGTGCAGCTGCGC
TGCAGCCTGCACTCATCTCCCGAGAGTTGTAAGTTGAAACTGTACGATTTTGATGTTCCCTGTTCTAGTGTAAGTGCCAA
TTATTGAGTGGTATGGAAAATATTTCTTCAAGAAACCAATCAGAGCGTAATTTCCGTGCTTGATGTTGTGCTTGCTTCTT
GCCGTTATATGTTCCCCGTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis