Browse Element(s) Details


Os.12776.1.S1_at

Description gb:AK069397.1
DB_XREF= gi:32979421
TID=Os.12776.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-010-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012A09, full insert sequence.
FL= gb:AK069397.1 gb:AK105021.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3760011/11Phosphate carrier protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37520OsAffx.4008.1.S1_at11/114+22115957..22118200expressed protein
LOC_Os04g37520Os.49478.1.S1_at1/114+22115957..22118200expressed protein
LOC_Os04g37530OsAffx.26363.1.S1_at11/114+22118427..22120817expressed protein
LOC_Os04g37540Os.17444.1.S1_a_at11/114+22121721..22127414expressed protein
LOC_Os04g37550Os.18235.1.S1_at10/114+22128884..22130725Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g37560OsAffx.14176.1.S1_at11/114+22131351..22131599hypothetical protein
LOC_Os04g37570OsAffx.26364.1.S1_at11/114+22134740..22136134Eukaryotic aspartyl protease family protein
LOC_Os04g37580Os.5960.1.S1_at11/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37580Os.5217.1.S1_at7/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37590OsAffx.14177.1.S1_at11/114+22139652..22142503F-box family protein, putative
LOC_Os04g37600Os.12776.1.S1_at11/114+22143167..22148131Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os04g37619Os.1605.1.S1_at10/114+22150569..22157739Zeaxanthin epoxidase, chloroplast precursor, putative, expressed
LOC_Os04g37630Os.53639.2.A1_at11/114+22157961..22168826expressed protein
LOC_Os04g37630Os.54686.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.48676.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.49908.2.A1_at1/114+22157961..22168826expressed protein
LOC_Os04g37640Os.57107.1.S1_at10/114+22162267..22164458Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37650Os.53639.1.S1_at11/114+22166287..22168634Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37660Os.7326.1.S1_at11/114+22170230..22174758protein phosphatase 2C, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005476molecular_functioncarnitine:acyl carnitine antiporter activity
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12776.1.S1_at--825--4751Chr04:22147631..22147655 (25 bp)
GCTGAAGGCCTGATGCTTGATTCTA
LOC_Os04g37600
Os.12776.1.S1_at--482--4931Chr04:22147645..22147669 (25 bp)
GCTTGATTCTATACTTCCGAACTTC
LOC_Os04g37600
Os.12776.1.S1_at--129--5491Chr04:22147663..22147687 (25 bp)
GAACTTCTAACAATTCCGTGCCAAC
LOC_Os04g37600
Os.12776.1.S1_at--184--1231Chr04:22147752..22147776 (25 bp)
AGTTCATTAATTCAATCGCTGCTAA
LOC_Os04g37600
Os.12776.1.S1_at--506--3511Chr04:22147793..22147817 (25 bp)
CATGCTCAGGGCTTACAAATTATAA
LOC_Os04g37600
Os.12776.1.S1_at--843--8851Chr04:22147870..22147894 (25 bp)
TGATGCTTGCGTGAATGACCGTGGC
LOC_Os04g37600
Os.12776.1.S1_at--214--8931Chr04:22147885..22147909 (25 bp)
TGACCGTGGCATCCTTCAATTTTTG
LOC_Os04g37600
Os.12776.1.S1_at--466--8771Chr04:22147939..22147963 (25 bp)
TGTTGATTACGCCTTGGGCCTTGGC
LOC_Os04g37600
Os.12776.1.S1_at--367--9551Chr04:22147964..22147988 (25 bp)
TCTATCTTTTGCTGGCCGGTTGTTA
LOC_Os04g37600
Os.12776.1.S1_at--964--6771Chr04:22147985..22148009 (25 bp)
GTTATCGTTGTAACTCTCCGCGGTA
LOC_Os04g37600
Os.12776.1.S1_at--828--5191Chr04:22148038..22148062 (25 bp)
GCAATCTGTGTAGTGTTCCATTCAA
LOC_Os04g37600
Target Sequence 
GCTGAAGGCCTGATGCTTGATTCTATACTTCCGAACTTCTAACAATTCCGTGCCAACTTGGATGATGGCGAAATAGGTTC
TTAGTTTAGAAACAAAAAGGATTTTGTTGACGAATGCTTATAGTTCATTAATTCAATCGCTGCTAAAAAAAACTGAGATA
AGCATGCTCAGGGCTTACAAATTATAAGGGTATTGCGGTACAGAGTTTAGGATAGTAGTATAGATGGCCATTCGATGAAT
GATGCTTGCGTGAATGACCGTGGCATCCTTCAATTTTTGTAGGTCTATTTTTTTTATTGCAGTAGAAATGTTGATTACGC
CTTGGGCCTTGGCTCTATCTTTTGCTGGCCGGTTGTTATCGTTGTAACTCTCCGCGGTANTCGTTCTTTTCTTCAGATGT
CAATAATGCAATCTGTGTAGTGTTCCATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis