Browse Element(s) Details


Os.12778.1.S2_at

Description gb:AK100302.1
DB_XREF= gi:32985511
TID=Os.12778.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078A16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078A16, full insert sequence.
FL= gb:AK120482.1 gb:AK072381.1 gb:AK100302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4271411/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42670NANA7+25546994..25548058retrotransposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.4.S1_x_at6/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.3.S1_x_at4/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.5.S1_at3/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.2.S1_at2/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.5.S1_x_at2/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.20729.1.S1_x_at1/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.1.S1_x_at11/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.3.S1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.4.A1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.8420.1.S1_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.20380.2.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22927.1.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42700Os.18196.1.S1_at11/117+25561731..25566146Paramyosin, putative, expressed
LOC_Os07g42714Os.12778.1.S2_at11/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42714OsAffx.19542.3.S1_x_at10/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42714OsAffx.9949.1.S1_at1/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42730Os.12018.1.S1_at11/117+25583333..25584539EF hand family protein, expressed
LOC_Os07g42740Os.31290.1.S1_at11/117+25589533..25591115expressed protein
LOC_Os07g42750Os.51867.1.S1_at10/117+25599947..25604818DDT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12778.1.S2_at--307--4011Chr07:25570426..25570450 (25 bp)
CGTCCTCTCGCGAGATGACCGTGGA
LOC_Os07g42714
Os.12778.1.S2_at--407--8931Chr07:25570441..25570465 (25 bp)
TGACCGTGGACGACTTCAAGAACTG
LOC_Os07g42714
Os.12778.1.S2_at--892--2111Chr07:25570588..25570612 (25 bp)
ACAGGGACAACAGCGGCTTCGTGGA
LOC_Os07g42714
Os.12778.1.S2_at--916--631Chr07:25570662..25570686 (25 bp)
ATGAAGGTTACTGCCTGGTAGAACT
LOC_Os07g42714
Os.12778.1.S2_at--463--5471Chr07:25570682..25570706 (25 bp)
GAACTGAACACTACTGGCAGCAATA
LOC_Os07g42714
Os.12778.1.S2_at--109--3511Chr07:25570726..25570750 (25 bp)
CATGGATTTTCATATGCTTGAGCTT
LOC_Os07g42714
Os.12778.1.S2_at--1055--8252Chr07:25570772..25570796 (25 bp)
GGCAGTAGTGCTAGCTTTTGATTAA
LOC_Os07g42714
Os.12778.1.S2_at--365--231Chr07:25570806..25570830 (25 bp)
ATATTGCCTTCTATGTTGCTTTTCT
LOC_Os07g42714
Os.12778.1.S2_at--76--771Chr07:25570907..25570931 (25 bp)
ATGTCTGCCATGATGCTGTGATACT
LOC_Os07g42714
Os.12778.1.S2_at--408--4731Chr07:25570921..25570945 (25 bp)
GCTGTGATACTTTGAGTGATCCTCT
LOC_Os07g42714
Os.12778.1.S2_at--494--6371Chr07:25570938..25570962 (25 bp)
GATCCTCTGTTGGTATTGACTCTGG
LOC_Os07g42714
Target Sequence 
CGTCCTCTCGCGAGATGACCGTGGACGACTTCAAGAACTGGCTGAAGCAGTTCGACACCGACAACGACGGCCGGATAAGC
CGGGGCGAGCTCCGGGAGGCCATCCGCCGCCGCGGCGGCTGGTTCTCCGGCCTGAAAGCCGGCCGCGCCGTCCGCCACGC
CGACAGGGACAACAGCGGCTTCGTGGACGAGTCCGAGATCGAGAACCTCGTCGCCTTCGCCCAGAAAACTCTGGGCATGA
AGGTTACTGCCTGGTAGAACTGAACACTACTGGCAGCAATAAGCATNATTAAGCTAGTTTCATGGATTTTCATATGCTTG
AGCTTAAAATGGGTAGAGAGCACTGTGGCAGTAGTGCTAGCTTTTGATTAAGCTATAAAAATATTGCCTTCTATGTTGCT
TTTCTTTGCTGTGTGGTAGTAACTGGTAAAGTTTGACTTGCATGCNAGCTTCTCCTGAATAATTTGTGTAAAAGCAGGAG
AATGTCTGCCATGATGCTGTGATACTTTGAGTGATCCTCTGTTGGTATTGACTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12778.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis