Browse Element(s) Details


Os.12835.2.S1_a_at

Description gb:AK061069.1
DB_XREF= gi:32971087
TID=Os.12835.2
CNT=99
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.12835 (NCBI UniGene Cluster)
UG_TITLE=MRNA for YY1 protein, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-C03, full insert sequence.
FL= gb:AK059384.1 gb:AK071736.1 gb:AK061069.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g423009/11Elongation factor 1-beta, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42250Os.6411.2.S1_at11/117+25285846..25288436Strictosidine synthase family protein, expressed
LOC_Os07g42260Os.6411.1.S1_a_at11/117+25287562..25292046Proteasome subunit alpha type 6, putative, expressed
LOC_Os07g42270NANA7+25293079..25293903hypothetical protein
LOC_Os07g42280Os.4972.1.S1_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280OsAffx.5607.1.S1_x_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280Os.36147.1.S1_at1/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42290Os.54374.1.S1_at11/117+25307339..25309942expressed protein
LOC_Os07g42300Os.12835.2.S1_a_at9/117+25311858..25314982Elongation factor 1-beta, putative, expressed
LOC_Os07g42310OsAffx.16683.1.S1_at11/117+25318861..25321486Lung seven transmembrane receptor family protein, expressed
LOC_Os07g42330OsAffx.5608.1.S1_at11/117+25325306..25326152SPX domain containing protein, expressed
LOC_Os07g42340NANA7+25328412..25328666hypothetical protein
LOC_Os07g42354OsAffx.28872.1.S1_at10/117+25331784..25337035hypothetical protein
LOC_Os07g42354Os.51960.1.S1_at2/117+25331784..25337035hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005853cellular_componenteukaryotic translation elongation factor 1 complex
GO:0003746molecular_functiontranslation elongation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12835.2.S1_a_at--378--491NONE
ATCTGGGAAGTCCTCAGTGTTGCTT
NONE
Os.12835.2.S1_a_at--1054--7251Chr07:25313166..25313190 (25 bp)
GTCCTCAGTGTTGCTTGATGTCAAA
LOC_Os07g42300
Os.12835.2.S1_a_at--792--5771Chr07:25313135..25313159 (25 bp)
GACGATGAGACTGACATGACCAAAT
LOC_Os07g42300
Os.12835.2.S1_a_at--152--6771Chr07:25313090..25313114 (25 bp)
GTTAAGATGGAAGGCCTCCTTTGGG
LOC_Os07g42300
Os.12835.2.S1_a_at--1149--3511NONE
CATCCAAGCTTGTCCCGGTTGGTTA
NONE
Os.12835.2.S1_a_at--159--8711Chr07:25312955..25312979 (25 bp)
TGTCCCGGTTGGTTACGGTATCAAG
LOC_Os07g42300
Os.12835.2.S1_a_at--754--3511Chr07:25312919..25312943 (25 bp)
CATGATGACCATTGTCGATGATCTT
LOC_Os07g42300
Os.12835.2.S1_a_at--327--6431Chr07:25312900..25312924 (25 bp)
GATCTTGTGTCGGTTGATAGTCTGA
LOC_Os07g42300
Os.12835.2.S1_a_at--474--9891Chr07:25312867..25312891 (25 bp)
TACTTCTACACCGAACCAGCGAATG
LOC_Os07g42300
Os.12835.2.S1_a_at--403--5431Chr07:25312855..25312879 (25 bp)
GAACCAGCGAATGAGTACATCCAGA
LOC_Os07g42300
Os.12835.2.S1_a_at--3--1291Chr07:25312413..25312830 (25 bp)
AGATCTAGATCTTCCTTGAGTCAGG
LOC_Os07g42300
Target Sequence 
ATCTGGGAAGTCCTCAGTGTTGCTTGATGTCAAACCATGGGACGATGAGACTGACATGACCAAATTGGAAGAAGCTGTGA
GGAATGTTAAGATGGAAGGCCTCCTTTGGGGCGCATCCAAGCTTGTCCCGGTTGGTTACGGTATCAAGAAATTGCAAATC
ATGATGACCATTGTCGATGATCTTGTGTCGGTTGATAGTCTGATTGAGGACTACTTCTACACCGAACCAGCGAATGAGTA
CATCCAGAGCTGCGACATTGTTGCGTTCAACAAGATCTAGATCTTCCTTGAGTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12835.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis