Browse Element(s) Details


Os.12873.1.S1_at

Description gb:AK060015.1
DB_XREF= gi:32970033
TID=Os.12873.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F07, full insert sequence.
FL= gb:AK060015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g108903/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10860OsAffx.27558.1.S1_at11/116+5662969..5664310Cytokinin-O-glucosyltransferase 1, putative
LOC_Os06g10870NANA6+5665157..5666014transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10880Os.54299.1.S1_at11/116+5676158..5681034bZIP transcription factor family protein, expressed
LOC_Os06g10890Os.12873.1.S1_at3/116+5687803..5689348expressed protein
LOC_Os06g10900OsAffx.27559.2.S1_x_at11/116+5692808..5693650scarecrow 3 protein, putative
LOC_Os06g10900OsAffx.27559.1.S1_x_at7/116+5692808..5693650scarecrow 3 protein, putative
LOC_Os06g10910Os.53557.1.S1_at11/116+5700640..5703992Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10910OsAffx.15364.2.S1_x_at1/116+5700640..5703992Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10920OsAffx.15362.1.S1_at11/116+5704392..5706867Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930Os.54289.1.S1_at11/116+5711155..5713609Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930Os.54289.1.S1_x_at11/116+5711155..5713609Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930OsAffx.15364.2.S1_x_at1/116+5711155..5713609Xyloglucan fucosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005498molecular_functionsterol carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12873.1.S1_at--912--6831Chr06:5688978..5689002 (25 bp)
GTTTCTTGACGAATATACCCACTAT
LOC_Os06g10890
Os.12873.1.S1_at--508--1811Chr06:5689059..5689083 (25 bp)
ACCCTGCACTGCATTGTGCTGTGAA
LOC_Os06g10890
Os.12873.1.S1_at--1091--3091Chr06:5689282..5689306 (25 bp)
AATATAGTTCGTTCTGTTTTACAGG
LOC_Os06g10890
Os.12873.1.S1_at--1114--4431Chr06:5689362..5689386 (25 bp)
GCCATATTAGTGTGCAGCTGTTTCA
NONE
Os.12873.1.S1_at--623--1611Chr06:5689377..5689401 (25 bp)
AGCTGTTTCATTTTCCTGTTACCAC
NONE
Os.12873.1.S1_at--195--2131Chr06:5689406..5689430 (25 bp)
ACAGTTTAACCATCCGCATATTCAG
NONE
Os.12873.1.S1_at--463--8751Chr06:5689438..5689462 (25 bp)
TGTACTACCCTGATAAGTCCATGCC
NONE
Os.12873.1.S1_at--635--3531Chr06:5689457..5689481 (25 bp)
CATGCCTCCATGGTTGATAGGGCTA
NONE
Os.12873.1.S1_at--862--10071Chr06:5689474..5689498 (25 bp)
TAGGGCTAGCATTGACAGTTGTGAT
NONE
Os.12873.1.S1_at--994--5831Chr06:5689511..5689535 (25 bp)
GACCATGATGTTAGCAACTGCCAAT
NONE
Os.12873.1.S1_at--444--7451Chr06:5689537..5689561 (25 bp)
GTGTAATCAGCTATCACTCATTTTC
NONE
Target Sequence 
GTTTCTTGACGAATATACCCACTATAGTGATGATATCAGATTTCTATAATGAAACTAGCAATTGCTTGGCAGTGCCGTTT
TACCCTGCACTGCATTGTGCTGTGAAGATCTACTAGAATGACTTACATTGTGAAACGGAGGAAGTAGTTTTAAAGGGCCT
AGCAATGTATTGTATAATATAGTTCGTTCTGTTTTACAGGGTTATACTGGTTCTTGAGTTTGATGGGGTTATGCTGGGTT
AGAGCAGGATTTGTAGCCATATTAGTGTGCAGCTGTTTCATTTTCCTGTTACCACAATAACAGTTTAACCATCCGCATAT
TCAGTACATAGTGTACTACCCTGATAAGTCCATGCCTCCATGGTTGATAGGGCTAGCATTGACAGTTGTGATAGAGAGAT
CCATGACCATGATGTTAGCAACTGCCAATTGTGTAATCAGCTATCACTCATTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis