Browse Element(s) Details


Os.12918.1.S1_s_at

Description gb:AK060662.1
DB_XREF= gi:32970680
TID=Os.12918.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12918 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B04, full insert sequence.
FL= gb:AK060662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g583208/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58270Os.46300.1.S1_at9/114+34471063..34472908hypothetical protein
LOC_Os04g58280Os.37834.1.S1_a_at11/114+34475300..34477144Stem-specific protein TSJT1, putative, expressed
LOC_Os04g58290OsAffx.19542.3.S1_x_at2/114+34481250..34483032retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58300NANA4+34483428..34485414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58310Os.16463.1.S1_at11/114+34487508..34488909expressed protein
LOC_Os04g58320Os.12918.2.S1_x_at11/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58320Os.12918.1.S1_s_at8/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58330Os.27014.1.S1_at11/114+34498821..34502184expressed protein
LOC_Os04g58340NANA4+34505240..34505710hypothetical protein
LOC_Os04g58350OsAffx.14466.1.S1_at11/114+34506072..34511325Transcription factor tfb2 family protein, expressed
LOC_Os04g58360OsAffx.26654.1.S1_x_at11/114+34511991..34512380hypothetical protein
LOC_Os04g58370OsAffx.14467.1.S1_at11/114+34513721..34514254hypothetical protein
LOC_Os04g58380Os.27077.1.A1_at10/114+34514531..34517028expressed protein
LOC_Os04g58390Os.18070.1.S1_at4/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58390Os.30557.2.S2_x_at1/114+34519017..34523242allantoinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12918.1.S1_s_at--1101--8991Chr04:34496923..34496942 (20 bp)
TGAAGTGTTACCGTCAATGGCGCTC
LOC_Os04g58320
Os.12918.1.S1_s_at--387--2851NONE
AAGTGTTACCGTCAATGGCGCTCAA
NONE
Os.12918.1.S1_s_at--160--7431NONE
GTGTTACCGTCAATGGCGCTCAAGA
NONE
Os.12918.1.S1_s_at--970--6771NONE
GTTACCGTCAATGGCGCTCAAGATC
NONE
Os.12918.1.S1_s_at--577--6091Chr04:34497749..34497773 (25 bp)
GAGTAAATTCTGGTGATCTGTGGAT
LOC_Os04g58320
Os.12918.1.S1_s_at--325--2251Chr04:34497753..34497777 (25 bp)
AAATTCTGGTGATCTGTGGATGCTC
LOC_Os04g58320
Os.12918.1.S1_s_at--443--111Chr04:34497755..34497779 (25 bp)
ATTCTGGTGATCTGTGGATGCTCAC
LOC_Os04g58320
Os.12918.1.S1_s_at--475--1871Chr04:34497808..34497832 (25 bp)
ACGATTACTAGAGAGAACCTTAGGC
LOC_Os04g58320
Os.12918.1.S1_s_at--941--5471Chr04:34498043..34498067 (25 bp)
GAACTTGTGAATTCTGACTAGATCC
LOC_Os04g58320
Os.12918.1.S1_s_at--478--9131Chr04:34498070..34498094 (25 bp)
TGCTGTGGTCAGATGTTGTAAATGC
LOC_Os04g58320
Os.12918.1.S1_s_at--1113--7491Chr04:34498074..34498098 (25 bp)
GTGGTCAGATGTTGTAAATGCTTGT
LOC_Os04g58320
Target Sequence 
TGAAGTGTTACCGTCAATGGCGCTCAAGATCCCAGTCCTGCCCCTTCTGCCGTGACAGCCTCAAAAGAGTAAATTCTGGT
GATCTGTGGATGCTCACAGATGACCGAGATGTCATTGACATGGCAACGATTACTAGAGAGAACCTTAGGCGCCTGTTTAT
GTACATTGAGAAGCTGCCTCTTGTTGCTCCGGACAACATCTTCTATGCCTATGATTCTCATGTAAAATAACCAGAGCTAC
TCATAATGACCTACTCATAATTGTTTTCGGAGAGTGACGCATGTCTTATTCATTCATGCAGAGGATGTTCCTTGTCGTAG
GATGTGGCTAACCCCAGGAGCAGACTGAACTTTGACAAGAGAACTTGTGAATTCTGACTAGATCCAATGCTGTGGTCAGA
TGTTGTAAATGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12918.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis