Browse Element(s) Details


Os.12918.2.S1_x_at

Description gb:AK099987.1
DB_XREF= gi:32985196
TID=Os.12918.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12918 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130B11, full insert sequence.
FL= gb:AK099987.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5832011/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58270Os.46300.1.S1_at9/114+34471063..34472908hypothetical protein
LOC_Os04g58280Os.37834.1.S1_a_at11/114+34475300..34477144Stem-specific protein TSJT1, putative, expressed
LOC_Os04g58290OsAffx.19542.3.S1_x_at2/114+34481250..34483032retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58300NANA4+34483428..34485414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58310Os.16463.1.S1_at11/114+34487508..34488909expressed protein
LOC_Os04g58320Os.12918.2.S1_x_at11/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58320Os.12918.1.S1_s_at8/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58330Os.27014.1.S1_at11/114+34498821..34502184expressed protein
LOC_Os04g58340NANA4+34505240..34505710hypothetical protein
LOC_Os04g58350OsAffx.14466.1.S1_at11/114+34506072..34511325Transcription factor tfb2 family protein, expressed
LOC_Os04g58360OsAffx.26654.1.S1_x_at11/114+34511991..34512380hypothetical protein
LOC_Os04g58370OsAffx.14467.1.S1_at11/114+34513721..34514254hypothetical protein
LOC_Os04g58380Os.27077.1.A1_at10/114+34514531..34517028expressed protein
LOC_Os04g58390Os.18070.1.S1_at4/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58390Os.30557.2.S2_x_at1/114+34519017..34523242allantoinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12918.2.S1_x_at--976--2431Chr04:34496883..34496907 (25 bp)
AACAAGGTTGTCTTGCCCAACTGCA
LOC_Os04g58320
Os.12918.2.S1_x_at--1068--4372Chr04:34496899..34496923 (25 bp)
CCAACTGCAGCCATGCTATGTGCAT
LOC_Os04g58320
Os.12918.2.S1_x_at--130--8731Chr04:34497792..34497816 (25 bp)
TGTCATTGACATGGCAACGATTACT
LOC_Os04g58320
Os.12918.2.S1_x_at--1064--4291Chr04:34497825..34497849 (25 bp)
CCTTAGGCGCCTGTTTATGTACATT
LOC_Os04g58320
Os.12918.2.S1_x_at--24--7031Chr04:34497843..34497867 (25 bp)
GTACATTGAGAAGCTGCCTCTTGTT
LOC_Os04g58320
Os.12918.2.S1_x_at--15--5911Chr04:34497916..34497940 (25 bp)
GAGCTACTCATAATGACCTACTCAT
LOC_Os04g58320
Os.12918.2.S1_x_at--113--8931Chr04:34497929..34497953 (25 bp)
TGACCTACTCATAATTGTTTTCGGA
LOC_Os04g58320
Os.12918.2.S1_x_at--403--51Chr04:34497942..34497966 (25 bp)
ATTGTTTTCGGAGAGTGACGCATGT
LOC_Os04g58320
Os.12918.2.S1_x_at--683--10551Chr04:34497971..34497995 (25 bp)
TTCATTCATGCAGAGGATGTTCCTT
LOC_Os04g58320
Os.12918.2.S1_x_at--684--6171Chr04:34497983..34498007 (25 bp)
GAGGATGTTCCTTGTCGTAGGATGT
LOC_Os04g58320
Os.12918.2.S1_x_at--1162--951Chr04:34498018..34498042 (25 bp)
AGGAGCAGACTGAACTTTGACAAGA
LOC_Os04g58320
Target Sequence 
AACAAGGTTGTCTTGCCCAACTGCAGCCATGCTATGTGCATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCAGTCCTG
CCCCTTCTGCCGTGACAGCCTCAAAAGAGTAAATTCTGGTGATCTGTGGATGCTCACAGATGACCGAGATGTCATTGACA
TGGCAACGATTACTAGAGAGAACCTTAGGCGCCTGTTTATGTACATTGAGAAGCTGCCTCTTGTTGCTCCGGACAACATC
TTCTATGCCTATGATTCTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTCATAATTGTTTTCGGAGAGTGACGC
ATGTNTTNTTCATTCATGCAGAGGATGTTCCTTGTCGTAGGATGTGGCTAANCCCAGGAGCAGACTGAACTTTGACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12918.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis