Browse Element(s) Details


Os.12932.1.S1_at

Description gb:AK061105.1
DB_XREF= gi:32971123
TID=Os.12932.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12932 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013065L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-B09, full insert sequence.
FL= gb:AK061105.1 gb:AK066354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4360011/11Peptide chain release factor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43550NANA11+25778360..25778689Glutaredoxin-like family protein
LOC_Os11g43560Os.46481.2.S1_x_at11/1111+25779770..25784498retrotransposon protein, putative, unclassified, expressed
LOC_Os11g43560Os.46481.2.S1_at11/1111+25779770..25784498retrotransposon protein, putative, unclassified, expressed
LOC_Os11g43570OsAffx.7397.1.S1_at11/1111+25785768..25786417hypothetical protein
LOC_Os11g43580NANA11+25787402..25787731Glutaredoxin-like family protein
LOC_Os11g43590Os.8649.1.S1_at2/1111+25793260..25798175Kelch motif family protein, expressed
LOC_Os11g43590Os.44984.1.S1_at1/1111+25793260..25798175Kelch motif family protein, expressed
LOC_Os11g43600Os.12932.1.S1_at11/1111+25799294..25803671Peptide chain release factor 1, putative, expressed
LOC_Os11g43610Os.11416.1.S1_at10/1111+25804034..25806008oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os11g43620Os.9003.1.S1_at10/1111+25806296..25808369small nuclear ribonucleoprotein F, putative, expressed
LOC_Os11g43630NANA11+25810516..25811441retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43640NANA11+25811841..25814722transposon protein, putative, unclassified
LOC_Os11g43650NANA11+25822907..25823676hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0006415biological_processtranslational termination
GO:0009657biological_processplastid organization and biogenesis
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009507cellular_componentchloroplast
GO:0003747molecular_functiontranslation release factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12932.1.S1_at--240--2551Chr11:25802634..25802865 (25 bp)
AACTGCAGGTTGGAACTGGTGCTCG
LOC_Os11g43600
Os.12932.1.S1_at--1069--8971Chr11:25803069..25803093 (25 bp)
TGAACTCACTGGTTTCCTCATGGGA
LOC_Os11g43600
Os.12932.1.S1_at--351--9631Chr11:25803086..25803110 (25 bp)
TCATGGGAGATATCGAGTCGGCTGT
LOC_Os11g43600
Os.12932.1.S1_at--1035--3451Chr11:25803238..25803262 (25 bp)
CAGTCCTGTTCTTCAATGGAGCAGA
LOC_Os11g43600
Os.12932.1.S1_at--2--891Chr11:25803280..25803304 (25 bp)
ATGGCCACATCTGTGGGCGCAGCGA
LOC_Os11g43600
Os.12932.1.S1_at--1055--371Chr11:25803312..25803336 (25 bp)
ATCAGCGCGATCGATCTGTCTGCAG
LOC_Os11g43600
Os.12932.1.S1_at--408--10631Chr11:25803343..25803367 (25 bp)
TTCCACCTGAGTACCAGACCATCAG
LOC_Os11g43600
Os.12932.1.S1_at--442--331Chr11:25803449..25803473 (25 bp)
ATACATATGCTTCCGTTGCTCATGA
LOC_Os11g43600
Os.12932.1.S1_at--1135--4931Chr11:25803503..25803527 (25 bp)
GCATTTTCAGTTCCTCTTACAGTTA
LOC_Os11g43600
Os.12932.1.S1_at--168--2991Chr11:25803554..25803578 (25 bp)
AATGTGTACATCTCAACAGTTGCAT
LOC_Os11g43600
Os.12932.1.S1_at--600--10131Chr11:25803587..25803611 (25 bp)
TATGCATTATGCACAATTCAACCTG
LOC_Os11g43600
Target Sequence 
AACTGCAGGTTGGAACTGGTGCTCGTTCTGANAAGATAAGGACGTACAATTATAAGGACAACAGAGTGACAGATCACCGG
TTGAAGATGAACTTTGAACTCACTGGTTTCCTCATGGGAGATATCGAGTCGGCTGTGCAGTCCTGTTCTTCAATGGAGCA
GAAGGAACTCCTGGAGGAGATGGCCACATCTGTGGGCGCAGCGAAGGTATGATCAGCGCGATCGATCTGTCTGCAGTCCT
CCTTCCACCTGAGTACCAGACCATCAGATAGAAATCATCCAATGGACATTGTGTTGAAACGGGTGGTGATCAATGGACAA
ATGTACATGAAGAAATCCGAAGATACATATACATATGCTTCCGTTGCTCATGAGCATGACTAATGTCAGAAAACACACTG
ATGCATTTTCAGTTCCTCTTACAGTTACAAATTTTGAGTAGTTGGATATATGCAATGTGTACATCTCAACAGTTGCATAG
CTACAATATGCATTATGCACAATTCAACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis