Browse Element(s) Details


Os.12965.1.S1_at

Description gb:AK120582.1
DB_XREF= gi:37990205
TID=Os.12965.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013136E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136E12, full insert sequence.
FL= gb:AK120582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2529011/11Methyladenine glycosylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25220OsAffx.6395.1.S1_at11/119+15110085..15111567IBR domain containing protein
LOC_Os09g25230Os.14491.2.S1_x_at2/119+15112451..15113440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25230Os.47463.1.S1_x_at1/119+15112451..15113440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25240NANA9+15113632..15117605transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25250NANA9+15118920..15122014transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25260Os.52695.1.A1_at3/119+15125330..15127928IBR domain containing protein, expressed
LOC_Os09g25270NANA9+15128714..15129076hypothetical protein
LOC_Os09g25280NANA9+15130483..15131397retrotransposon protein, putative, LINE subclass
LOC_Os09g25290Os.12965.1.S1_at11/119+15134235..15138320Methyladenine glycosylase family protein, expressed
LOC_Os09g25300Os.40360.1.S1_at9/119+15143153..15146964hypothetical protein
LOC_Os09g25300Os.40360.1.S1_x_at7/119+15143153..15146964hypothetical protein
LOC_Os09g25300Os.40855.5.S1_x_at3/119+15143153..15146964hypothetical protein
LOC_Os09g25310Os.7194.1.S1_at10/119+15152763..1515600126S proteasome non-ATPase regulatory subunit 9, putative, expressed
LOC_Os09g25320Os.8168.1.S1_at10/119+15159892..15161883polyubiquitin 2, putative, expressed
LOC_Os09g25330Os.8752.1.S1_at11/119+15162138..15167797NPH3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0008725molecular_functionDNA-3-methyladenine glycosylase I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12965.1.S1_at--763--4331Chr09:15134665..15134689 (25 bp)
CCATGGATGGCGCTGACAATCACAG
LOC_Os09g25290
Os.12965.1.S1_at--286--491Chr09:15134606..15134630 (25 bp)
ATCTGTGGATTGGTCGAGTGCGTCA
LOC_Os09g25290
Os.12965.1.S1_at--375--7191Chr09:15134571..15134595 (25 bp)
GTCGAGAGCTAGAGCCACCACCGTG
LOC_Os09g25290
Os.12965.1.S1_at--392--91Chr09:15134530..15134554 (25 bp)
ATTCGCTCAATCGACGGCGGCAATG
LOC_Os09g25290
Os.12965.1.S1_at--655--4691Chr09:15134514..15134538 (25 bp)
GCGGCAATGGCGACTGATCCAGTAG
LOC_Os09g25290
Os.12965.1.S1_at--259--6931Chr09:15134493..15134517 (25 bp)
GTAGGAGCTTCACAGTTTGTTCACT
LOC_Os09g25290
Os.12965.1.S1_at--1090--1111Chr09:15134458..15134482 (25 bp)
AGTGAGTTTGCTGCAGTGGCCTCCG
LOC_Os09g25290
Os.12965.1.S1_at--310--9291Chr09:15134437..15134461 (25 bp)
TCCGTTTTTCTTGGCGTGTCAGAGA
LOC_Os09g25290
Os.12965.1.S1_at--73--6511Chr09:15134365..15134389 (25 bp)
GATATGTGCTTTGCTTGAACTGTGT
LOC_Os09g25290
Os.12965.1.S1_at--838--9651Chr09:15134294..15134318 (25 bp)
TCAGACGATTTGATCACCTTACCGG
LOC_Os09g25290
Os.12965.1.S1_at--980--9671Chr09:15134281..15134305 (25 bp)
TCACCTTACCGGCTGCAGATCATGT
LOC_Os09g25290
Target Sequence 
CCATGGATGGCGCTGACAATCACAGCAAGAGCATGGTGAAAGATCAGGAGGTGAACATGATCTGTGGATTGGTCGAGTGC
GTCAGCTTGGAGCCGTCGAGAGCTAGAGCCACCACCGTGCTCAGCATCTCCTAGCATTCGCTCAATCGACGGCGGCAATG
GCGACTGATCCAGTAGGAGCTTCACAGTTTGTTCACTGTATAGAGTGAGTGAGTTTGCTGCAGTGGCCTCCGTTTTTCTT
GGCGTGTCAGAGATTGGGTTTGTGAAATTGTGTATATGATTGTTCATTTGAGGTTTGGGTGATATGTGCTTTGCTTGAAC
TGTGTGGGTTCAGAGAAAGATACATACATAGGTAGCCAAAAAAAAAAAGTTTCAGACGATTTGATCACCTTACCGGCTGC
AGATCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis