Browse Element(s) Details


OsAffx.6395.1.S1_at

Description tigr:9637.m02174
TID=OsAffx.6395.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2522011/11IBR domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25160NANA9+15084403..15085697transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25170OsAffx.19600.2.S1_s_at11/119+15086006..15087115hypothetical protein
LOC_Os09g25190Os.51952.1.S1_x_at11/119+15089662..15091887zinc finger family protein, putative, expressed
LOC_Os09g25200Os.56136.1.S1_at10/119+15093500..15094506IBR domain containing protein, expressed
LOC_Os09g25210NANA9+15100741..15101103hypothetical protein
LOC_Os09g25220OsAffx.6395.1.S1_at11/119+15110085..15111567IBR domain containing protein
LOC_Os09g25230Os.14491.2.S1_x_at2/119+15112451..15113440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25230Os.47463.1.S1_x_at1/119+15112451..15113440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25240NANA9+15113632..15117605transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25250NANA9+15118920..15122014transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25260Os.52695.1.A1_at3/119+15125330..15127928IBR domain containing protein, expressed
LOC_Os09g25270NANA9+15128714..15129076hypothetical protein
LOC_Os09g25280NANA9+15130483..15131397retrotransposon protein, putative, LINE subclass
LOC_Os09g25290Os.12965.1.S1_at11/119+15134235..15138320Methyladenine glycosylase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6395.1.S1_at--283--1291Chr09:15110677..15110701 (25 bp)
AGATCGGCCAGTGCAGGGACATCGT
LOC_Os09g25220
OsAffx.6395.1.S1_at--863--5971Chr09:15110757..15110781 (25 bp)
GAGACGACGAAGTGCTACTGCCCGT
LOC_Os09g25220
OsAffx.6395.1.S1_at--620--4411Chr09:15110866..15110890 (25 bp)
GCCACCGGATGTTCTGCGCGAGCTG
LOC_Os09g25220
OsAffx.6395.1.S1_at--977--5891Chr09:15110885..15110909 (25 bp)
GAGCTGCCGCGTGCCTTGGCATGAT
LOC_Os09g25220
OsAffx.6395.1.S1_at--893--6251Chr09:15110907..15110931 (25 bp)
GATGGGATCGACTGCAAGGAGTTCA
LOC_Os09g25220
OsAffx.6395.1.S1_at--898--1151Chr09:15110926..15110950 (25 bp)
AGTTCAGGAAGCTGGGCAACGACGA
LOC_Os09g25220
OsAffx.6395.1.S1_at--1043--2291Chr09:15110997..15111021 (25 bp)
AAATGGCAGAGGTGTCCTCAGTGTA
LOC_Os09g25220
OsAffx.6395.1.S1_at--305--2271Chr09:15111036..15111060 (25 bp)
AAATCAGCGGGATGCACGTTCATGA
LOC_Os09g25220
OsAffx.6395.1.S1_at--35--3531Chr09:15111056..15111501 (25 bp)
CATGAGGTGCAGGTGTGGATTTTTC
LOC_Os09g25220
OsAffx.6395.1.S1_at--300--7511Chr09:15111491..15111515 (25 bp)
GTGGATTTTTCTTCTGCTACAACTG
LOC_Os09g25220
OsAffx.6395.1.S1_at--291--3831Chr09:15111513..15111537 (25 bp)
CTGCGCAGCTCCCATGACCAAATTA
LOC_Os09g25220
Target Sequence 
AGATCGGCCAGTGCAGGGACATCGTCCCGCCGGAGCTGTTCGGCCGGTGGAGCGTCTCGCTGTGGGAGTCCTCGATGGGG
GAGACGACGAAGTGCTACTGCCCGTTCAAGGATTGCTCGGCGATGCTGATCAACGACAACGGCGACGGCGGCGACGCGGA
GGAGATCGCGGAGACGGAGTGCCCCCACTGCCACCGGATGTTCTGCGCGAGCTGCCGCGTGCCTTGGCATGATGGGATCG
ACTGCAAGGAGTTCAGGAAGCTGGGCAACGACGAGAAGGGTAAGGAGGATCTGATGTTGAAGAAGCTGGCTGGGAAGAAG
AAATGGCAGAGGTGTCCTCAGTGTAGGATGTACGTGGAGAAATCAGCGGGATGCACGTTCATGAGGTGCAGGTGTGGATT
TTTCTTCTGCTACAACTGCGCAGCTCCCATGACCAAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis