Browse Element(s) Details


Os.51952.1.S1_x_at

Description gb:AK073786.1
DB_XREF= gi:32983809
TID=Os.51952.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067G01, full insert sequence.
FL= gb:AK073786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2519011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25139Os.27861.1.S2_a_at11/119+15064800..15071061expressed protein
LOC_Os09g25139Os.27861.1.S1_a_at11/119+15064800..15071061expressed protein
LOC_Os09g25150Os.9685.2.S1_at11/119+15075245..15078325cinnamoyl CoA reductase, putative, expressed
LOC_Os09g25150Os.9685.1.S1_a_at10/119+15075245..15078325cinnamoyl CoA reductase, putative, expressed
LOC_Os09g25160NANA9+15084403..15085697transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25170OsAffx.19600.2.S1_s_at11/119+15086006..15087115hypothetical protein
LOC_Os09g25190Os.51952.1.S1_x_at11/119+15089662..15091887zinc finger family protein, putative, expressed
LOC_Os09g25200Os.56136.1.S1_at10/119+15093500..15094506IBR domain containing protein, expressed
LOC_Os09g25210NANA9+15100741..15101103hypothetical protein
LOC_Os09g25220OsAffx.6395.1.S1_at11/119+15110085..15111567IBR domain containing protein
LOC_Os09g25230Os.14491.2.S1_x_at2/119+15112451..15113440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25230Os.47463.1.S1_x_at1/119+15112451..15113440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25240NANA9+15113632..15117605transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51952.1.S1_x_at--936--731Chr09:15091311..15091335 (25 bp)
ATGTTCTGCGCCCAGTGCAAGGTGC
LOC_Os09g25190
Os.51952.1.S1_x_at--271--6151Chr09:15091442..15091466 (25 bp)
GAGGTGCCCCAAGTGCAAGATGTAC
LOC_Os09g25190
Os.51952.1.S1_x_at--1013--5291Chr09:15091479..15091503 (25 bp)
GAAGGCTGCGTGTTCATCATCTGCA
LOC_Os09g25190
Os.51952.1.S1_x_at--1025--411Chr09:15091610..15091631 (22 bp)
ATCATCTGCAGGTGTGGCCACTGCT
LOC_Os09g25190
Os.51952.1.S1_x_at--489--9471Chr09:15091641..15091665 (25 bp)
TCTGTGCATCGCCAATGTCGAGGGA
LOC_Os09g25190
Os.51952.1.S1_x_at--647--691Chr09:15091655..15091679 (25 bp)
ATGTCGAGGGACAACCACCATTGCA
LOC_Os09g25190
Os.51952.1.S1_x_at--196--6411Chr09:15091705..15091729 (25 bp)
GATCTGAAGCTGCAGAACTCTGATT
LOC_Os09g25190
Os.51952.1.S1_x_at--361--10031Chr09:15091790..15091814 (25 bp)
TAGTTTCTACTTATTAGCCCGTGCC
LOC_Os09g25190
Os.51952.1.S1_x_at--237--1671Chr09:15091805..15091829 (25 bp)
AGCCCGTGCCGTACTTAGCATTAAT
LOC_Os09g25190
Os.51952.1.S1_x_at--1014--3131Chr09:15091827..15091851 (25 bp)
AATTAGCTCGTATATTACCACTCTG
LOC_Os09g25190
Os.51952.1.S1_x_at--839--9971Chr09:15091842..15091866 (25 bp)
TACCACTCTGATGTCATTTGTCAAT
LOC_Os09g25190
Target Sequence 
ATGTTCTGCGCCCAGTGCAAGGTGCCGTGGCACGGCGGTGCCACCTGCGCCGAGTTCCAGAAGCTCGGCAAGGACGAGCG
CGGCCGGGACGACCTGCTGCTGAGGAAGGTGGCGAAGGACAGCAAGTGGCAGAGGTGCCCCAAGTGCAAGATGTACGTGG
AGAGAGTCGAAGGCTGCGTGTTCATCATCTGCAGGTGTGGCCACTGCTTCTGCTACCTCTGTGCATCGCCAATGTCGAGG
GACAACCACCATTGCAAGAAGTGCAAGCGAACGTGGTGAATGATCTGAAGCTGCAGAACTCTGATTGAGTCGAAGAAGTT
ACTTAAGTTTCGTACTGTTAAAAATGGTCAATTACTATCATTAACCTAGTTTCTACTTATTAGCCCGTGCCGTACTTAGC
ATTAATTAGCTCGTATATTACCACTCTGATGTCATTTGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51952.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis