Browse Element(s) Details


Os.9685.1.S1_a_at

Description gb:AK067949.1
DB_XREF= gi:32977967
TID=Os.9685.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9685 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128P15, full insert sequence.
FL= gb:AK104860.1 gb:AK067949.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2515010/11cinnamoyl CoA reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25130OsAffx.6391.1.S1_at10/119+15059396..15060349hypothetical protein
LOC_Os09g25139Os.27861.1.S2_a_at11/119+15064800..15071061expressed protein
LOC_Os09g25139Os.27861.1.S1_a_at11/119+15064800..15071061expressed protein
LOC_Os09g25150Os.9685.2.S1_at11/119+15075245..15078325cinnamoyl CoA reductase, putative, expressed
LOC_Os09g25150Os.9685.1.S1_a_at10/119+15075245..15078325cinnamoyl CoA reductase, putative, expressed
LOC_Os09g25160NANA9+15084403..15085697transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25170OsAffx.19600.2.S1_s_at11/119+15086006..15087115hypothetical protein
LOC_Os09g25190Os.51952.1.S1_x_at11/119+15089662..15091887zinc finger family protein, putative, expressed
LOC_Os09g25200Os.56136.1.S1_at10/119+15093500..15094506IBR domain containing protein, expressed
LOC_Os09g25210NANA9+15100741..15101103hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9685.1.S1_a_at--927--7291NONE
GTGCCCACAAGGTGCTCTGACGAGG
NONE
Os.9685.1.S1_a_at--754--9091Chr09:15075578..15075602 (25 bp)
TGCTCTGACGAGGTGAACCCACGGA
LOC_Os09g25150
Os.9685.1.S1_a_at--1135--7351Chr09:15075566..15075590 (25 bp)
GTGAACCCACGGAAGCAGCCGTACA
LOC_Os09g25150
Os.9685.1.S1_a_at--929--2211Chr09:15075544..15075568 (25 bp)
ACAAGATGTCCAACAAGAAGCTGCA
LOC_Os09g25150
Os.9685.1.S1_a_at--406--2691Chr09:15075527..15075551 (25 bp)
AAGCTGCAGGATCTTGGCCTCCACT
LOC_Os09g25150
Os.9685.1.S1_a_at--706--10871Chr09:15075514..15075538 (25 bp)
TTGGCCTCCACTTCATACCTGTGAG
LOC_Os09g25150
Os.9685.1.S1_a_at--469--2051Chr09:15075505..15075529 (25 bp)
ACTTCATACCTGTGAGCGACTCGCT
LOC_Os09g25150
Os.9685.1.S1_a_at--893--5711Chr09:15075488..15075512 (25 bp)
GACTCGCTCTACGAGACGGTGAAGA
LOC_Os09g25150
Os.9685.1.S1_a_at--1030--5911Chr09:15075373..15075397 (25 bp)
GAGCATTTAACGTTCTCCTGTAACA
LOC_Os09g25150
Os.9685.1.S1_a_at--1083--2571Chr09:15075365..15075389 (25 bp)
AACGTTCTCCTGTAACAGTGTTAGG
LOC_Os09g25150
Os.9685.1.S1_a_at--449--2491Chr09:15075352..15075376 (25 bp)
AACAGTGTTAGGCATCTGTTGTTAT
LOC_Os09g25150
Target Sequence 
GTGCCCACAAGGTGCTCTGACGAGGTGAACCCACGGAAGCAGCCGTACAAGATGTCCAACAAGAAGCTGCAGGATCTTGG
CCTCCACTTCATACCTGTGAGCGACTCGCTCTACGAGACGGTGAAGAGCCTCCAGGAGAAGGGGCACCTTCCAGTNCTGA
GCAAAGAGATCCCAGAAGAGTTGAATGGTGNGCCAGCATGATACTGTTGAAGAAACAGAGCATTTAACGTTCTCCTGTAA
CAGTGTTAGGCATCTGTTGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9685.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis